Oncorhynchus keta (chum salmon): 118375777
Help
Entry
118375777 CDS
T09424
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118375777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118375777
03036 Chromosome and associated proteins [BR:
oke03036
]
118375777
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118375777
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118375777
mRNA degradation factors
5'-3' decay
Decapping complex
118375777
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118375777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
118375777
NCBI-ProteinID:
XP_035618274
LinkDB
All DBs
Position
31:23295254..23311554
Genome browser
AA seq
486 aa
AA seq
DB search
MSTARTENPTSIMGLNKPNGQFRGPLKPVGLTPGSLATTPQPDAHQKGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFHSAEPDAEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacagagaacccaacatccataatgggactgaacaagcccaacggg
cagtttagaggaccactcaagccagttggactaacaccaggatccctggcaactacccca
caaccagatgcccaccagaagggaggcaacattccccagggcagtgggggcatccgtttt
ggcgatgactggaagaagtgcctgcagcttccacagaaggactgcagatttagaacatca
gatgtgacatcgaccaaggggaatgagtttgaggactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggaaaaaccatctcctgtacaggaggagagcatcccc
attgctctgtcaggaagggacatcctggcccgggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcctggagaggatagacctgaagaaggaccacatacaggccatg
gtgatggttcctacacgagagttggccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggtggggtcaaggtcatggccaccacgggaggcaccaacctgagggacgac
atcatgcgcctggacgagactgtgcatgtggtgatagccacaccaggcaggatcctggac
ctgataaagaagggcgtggccaaagtggacaaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggtcctcatcgaagacatcatcagcttcctggct
aaggggcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctgacactgaagggc
atcacccagtactatgcctacgtcactgagaggcagaaagtccactgcctaaacaccctc
ttctccaggctccagatcaaccagtccatcatcttctgtaactccacccagcgggttgag
ctgctggccaaaaagataacccagctgggctactcctgcttctacatccacgccaagatg
atgcaggagtacagaaaccgtgttttccatgacttcagaaacggactctgcaggaacttg
gtctgcacagatctgttcaccaggggaattgacatccaagcagtgaacgtagtgatcaac
tttgacttccccaagaatgctgagacgtacttgcatcgcatcggcagatcagggaggttc
ggtcacctgggtctggccataaacctgatcacctctgaggaccgcttcaacctgaagtcc
atcgaggaccagctggtgaccgacattaagcccatccccggcagcatcgacaagggcctg
tacgtggcagagttccactctgccgaaccagacgccgaagacgagatccgaggcaaggac
ggcgagttaagtgcagcataa
DBGET
integrated database retrieval system
