Oncorhynchus keta (chum salmon): 118375805
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Entry
118375805 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oke04147
]
118375805
00535 Proteoglycans [BR:
oke00535
]
118375805
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118375805
Exosome [BR:
oke04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118375805
Proteoglycans [BR:
oke00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118375805
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118375805
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
DUF959
DUF1554
Motif
Other DBs
NCBI-GeneID:
118375805
NCBI-ProteinID:
XP_052356244
LinkDB
All DBs
Position
Unknown
AA seq
1914 aa
AA seq
DB search
MTLWLGLLLALSAGRLDAWFWNKDPDPTTQAPTKAPPLGKAGGQPKRGEENLAGVGAEII
NVADGIRKFVQTWDATPTTWTDRGVASPTTQTVNKEESGSGEGSGSGSKEGSGSGEGSGS
GSKEGSGSGEGSGSGSKEGSGSGEGSGSGSKEGSGSGEGSGSGEGSGSGSKEGSGSGEGS
GSGSKEGYGSGEGSGSGSKEGSESGEGSGSGEGYGSGSKEGSGSGEGYGSGSKEGSGSKE
GSGSGEGYGSGSKEGSGSGSKEGSGSGSKEGSGSGSEMGSGSGSGVGSGFGSRADSGVGS
GTGSGSGSGLGERESLVLPTNLTGVVEDDLTGVEGVKQGEPKTNLSDITSHDHNGTCHLV
SSDWPICISRGSKHFSLPNFLNHTSVEEVGVALREWAWLAKAGCHHGAEWFLCLLLVPRC
PLPGQVLDKVPLLPCCSFCQVLQDSCWPDLDDGRLPVECNLLPGRDQEAGLRCTPCVSVS
HRKGESGVTLLQLIGDLPPDDSQAGPGGKPAYYFGGQDGLTAAGQPALAHLPNPFYRDFS
LVFQILPSSPGVLFSITDASQKFMYVGVKLSAPDADGRNQKILFYYTEPDSEASYLAASF
TVPSLDLVSWTKFSLSVFNDQVTFFMGCDASGKTVKLERSPDDMELDSGAGIFVGQAGGA
DPDRFEGAIAELNVVGNPRAAELLCEDDDDSDAASGDFGSGDGDRRETGKTTTPPSLRPV
PEPPLTSSVSDRLSETGDRNHQTSVESRPGSGGQPGPTGSNGVKGDRGEKGSPGDRGPAG
PKGESGSFSSSASSSGSSSGGGERGEKGDKGLKGSSGFGYPGSKGDRGVPGPPGPPGPGG
PAAQVVRLGDGSVVQPVAGPMGPMGPPGAKGPAGPQGPEGEAGDPGEDGKLGPAGDRGFP
GTQGDSGVKGQKGDRGDGYPGPRGSPGPPGPPGPGTVDRATFVDVEGSGGFPDLEKIQTL
RGLPGPPGPPGPPGPSAGGVSSHGSGSFGPPGPPGQDGARGLPGPAGPPGRPGTPGPSSG
EKGEAGDLGLPGPSGERGSQGDPGVPGQTGQGGLAGLPGPMGPIGTPGPPGPPGQSYPVR
YGDGEGSGVTGVNGVAGVIGIPGPQGPPGIAGLPGRSGLPGLSGEKGSEGARGRDGTPGM
DGFPGQLGDKGERGDRGERGEPGREGGPPGPPGAPGPPGQIYQTSGSFDGVLGNQGQGGP
GLPGRAGFPGPMGPKGDTGEPGQPGYAAKGEKGEPGIIMGPDGRPLYLGGLGSQPGEKGL
PGPEGPPGPYGPAGLKGDIGMPGRPGRPGLNGVKGERGDSAGGTGGYGGPPGPPGPPGPP
GPAVPLDRFNRDDVSRLYPDSKGDKGDRGVPGIPGVPGLTSNFDIYTFKREMKGERGDSG
MKGEKGEPAGGYYGGGYGGQGGQPGPPGLPGPKGESIIGPSGPQGPPGNPGREYEGRQGN
PGPPGPPGPSGSSSSPGAYRPTQTISIPGPPGPPGPPGTDGHSSGVMVLRSYDTMTATAR
RQAEGRWCIWSTKQTFTSEYEMASGKSSLPHIALPPAQGNEVAAVDPPPVVYYQPDHPSN
TATEQPPRQLDPHQPQPEGQHPVHPDPRYPTHPDPRYPAQPDPRYPAQPDPRYPAQPDPR
YPAQPDPRYPAQPDPRYPAQPDPRYPAQPDPRYPAQPDPRYPAQPDPRYPSHSDPRYPSH
TDPRYPSYTDRQHNPDPVQPQPAPVPQNPVYTDTRYPVTPQRRPRPPETPSHQHTSGPSI
HLVALNAPQGGNMRGIRGADFLCFNQARAIGLKGTFRAFLSSKLQDLYSIVRKSDRDRMP
IVNLKDEVLFDSWEAIFSDSEGRVKDNVPIYSFDGKDIFTDGTWPDKMIWHGSTSRGHGQ
VDNYCETWRIGERVLTGMASSLQGGQLLQQRTSSCHSSYAVLCIENSYIGQFKR
NT seq
5745 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgtggttgggcctcctcctggctctcagcgcaggtcgtctggatgcttggttc
tggaacaaggaccctgatcctactacccaagccccaacgaaggctccgccactgggcaag
gcaggaggacagcccaagagaggtgaggagaacctggcaggggttggggcagaaatcatc
aacgtggctgatgggatccgtaagtttgtgcagacgtgggacgcgaccccaaccacttgg
actgacagaggagtggcgagccctaccacacagacggttaataaggaggagtctgggtct
ggggaaggatctgggtctgggtctaaggaaggatctgggtctggggaaggatctgggtct
gggtctaaggaaggatctgggtctggggaaggatctgggtctgggtctaaggaaggatct
gggtctggggaaggatctgggtctgggtctaaggaaggatctgggtctggggaaggatct
gggtctggggaaggatctgggtctgggtctaaggaaggatctgggtctggggaaggatct
gggtctgggtctaaggaaggatatgggtctggggaaggatctgggtctgggtctaaggaa
ggatctgagtctggggaaggatctgggtctggggaaggatatgggtctgggtctaaggaa
ggatctgggtctggggaaggatatgggtctgggtctaaggaaggatctgggtctaaggaa
ggatctgggtctggggaaggatatgggtctgggtctaaggaaggatctgggtctgggtct
aaggaaggatctgggtctgggtctaaggaaggatctgggtctgggtctgagatgggttca
ggatcagggtctggtgtagggtctgggtttggatcgagggctgattctggtgtaggttca
gggaccggctcgggttcggggtcagggcttggagaaagggaaagcttggttctccccact
aacctaacaggggtggtggaggatgacctcacaggggttgagggggtgaaacagggcgaa
ccaaagaccaacctctctgacatcacttctcatgaccacaatggaacctgccacctcgtg
tcctctgattggccgatctgcatatcaagggggtcgaagcatttctcgctgcccaacttc
ctgaaccacacctctgtggaggaggttggcgtggccctgagagagtgggcgtggctggcc
aaggcggggtgccaccatggagccgaatggttcctctgcctcctcctggtgcccaggtgc
ccgctgcctggccaggtgctcgacaaggttccccttctgccctgctgcagcttctgccaa
gtcctgcaagacagctgctggccagacctggatgacgggcgccttcctgtagagtgtaat
ttgctgcccggcagggatcaggaggcggggttgcggtgtacgccatgcgtgtcagttagt
catcggaaaggagagagtggtgtgactctactgcagctgatcggagacctgcctcctgat
gattcccaggccggtccaggggggaaacccgcctactacttcggagggcaggacgggctg
acagctgcgggacagccggccctggcccacctccccaaccccttctacagagacttctcc
ctggtcttccaaatcctcccctccagccccggggtcctcttctccatcacagacgcctcc
cagaagttcatgtacgtgggggtgaagctgagcgccccggacgctgacggcaggaatcag
aagattctgttctactacacagagcccgactctgaggcctcgtacctggccgctagtttc
accgtgccctccctggacctagtctcctggaccaagttctctctgtccgtgttcaacgac
caggtgaccttcttcatggggtgcgacgcctctgggaagacggtgaagttggagcgctcg
ccggatgacatggagctggacagcggggcgggcatcttcgtgggtcaggcgggaggcgcg
gaccctgacaggttcgagggggcgatcgctgagctgaacgtggtgggtaaccctcgagca
gctgagctactctgtgaagatgatgatgactcagacgctgcctcaggtgactttggcagt
ggggatggggacagaagagaaaccggcaaaactaccacccctccatctctccgaccggtg
ccagagccccctctgacatcatcagtgagcgacaggctctcagagacaggtgacaggaat
catcagacctcagtagagtccagaccagggtcaggaggtcaaccaggccctactggttct
aacggagtgaagggggacagaggggagaagggcagtccaggggacagaggtcccgccggg
ccaaagggggaatcggggtctttctccagctctgcttcttcctctggctcttcatcaggc
ggaggagaacgtggagaaaagggagacaaaggcttgaagggcagttctgggtttggttac
ccaggctccaagggggaccgtggtgtacctggtccccctggccctcctggccctgggggg
ccagctgcccaggttgtgaggctaggggacggctctgtggtgcagccagtggctggtcca
atgggaccgatggggcccccaggggccaaaggaccagcaggaccccagggaccagaggga
gaggcgggggatccaggagaggatggcaaattaggacctgccggagacagagggttccca
ggaacacaaggagactcaggggtcaaaggacaaaagggggatcgtggtgatggttaccca
ggacccaggggttctccagggccacctggacccccaggcccagggacagttgatcgcgct
acatttgtggatgtggaaggctccggaggattcccagatttggagaaaatacagactctc
cgtggtctaccaggccccccgggcccaccaggtccccctggcccctcagccggtggtgtc
agctcccatgggtcaggctctttcgggccccctggacctcccggacaggacggggcccgt
ggcctaccagggcccgctggtccacctggcaggcctggaaccccaggacccagtagcgga
gagaagggagaagctggtgatctaggtcttccagggcccagtggagagaggggttctcag
ggtgaccctggagtgcctggtcagacagggcaggggggcttggctgggcttcctgggccc
atgggaccgattgggactccaggaccacccggaccccccggacagtcctaccctgtgcgt
tatggtgacggggagggttccggagtgacgggggtcaatggtgttgctggagtgataggg
attccaggaccacagggtccgcccggaatcgcaggccttccaggaagatctggtttgcct
gggctttcgggagagaaggggagcgagggagcaagaggacgggatggaacaccagggatg
gacggattcccaggacaattgggagacaaaggggagaggggagacagaggagaaaggggt
gagccaggacgtgaaggggggccccctggacctccgggagcccctggcccaccgggacag
atctaccagacctcaggcagctttgatggagttcttgggaatcaaggacagggaggacca
ggtcttcccggccgggcaggattcccagggcctatgggaccaaagggagatacaggagag
cctggacagccaggatacgcagctaagggggagaaaggagaacctggtattatcatgggg
cctgatggaagacccctgtacctgggagggctggggtctcaaccgggagagaagggactc
ccgggacctgagggacctcctggtccctatggtccagctggtctaaagggagatataggc
atgccaggtagaccgggccgtcctgggttgaatggtgtcaaaggagagaggggggattca
gcaggagggactggaggatatggaggtcctccaggaccacctggcccacccggacccccc
gggccagcagtacctctggacaggttcaatagggatgatgtatcacggttatatcctgac
tccaaaggagacaaaggtgatcgtggagtaccaggaatacccggggtaccaggtctcacg
tccaactttgacatctacaccttcaagagggagatgaagggagagagaggagactcgggg
atgaagggggagaagggcgagccagccggaggatattatggtggcggttacggtggacag
ggtggtcaacctggacctccaggacttccggggccaaagggagagtccatcatcggtcct
tcagggccccagggccctccaggtaacccaggaagagagtacgaaggcaggcaagggaac
ccaggcccaccggggccccccggaccttcaggatcatcctcctcacctggagcctacagg
ccaacacagaccatcagcatccctggacctccgggccctcctggcccacctggaactgat
ggacactcctctggggtgatggtgctgaggtcatatgacacgatgacagccacagccaga
cgacaggcagaggggcgttggtgtatctggtcgaccaaacagacttttacatcagagtac
gagatggcttccggcaaatccagcttgccacacatagctttaccccctgcccagggtaat
gaggtagcagcagtcgaccctcctccagtggtctactaccagccagaccatccctctaac
acggccacagagcaaccccccagacagctagacccccaccagccacagcctgagggacaa
caccctgttcaccccgacccacgttacccgactcacccggatccacgctacccagcccag
cctgatccacgctatccagcccagcctgatccacgctacccagcccagccagatccacgc
tatccagcccagccagatccacgctatccagcccagccagatccacgctatccagcccag
ccagatccacgctacccagcccagccagatccacgctacccagctcagccagatccacgc
tacccagctcagccagatccacgctacccctcacattcagaccccagatacccctcacac
actgatccacggtaccccagttatacagaccgacagcacaaccctgaccctgtccagccc
cagccagcccctgtcccacagaacccagtttacacagacacccgctaccctgtaacccca
caacgcagacccagaccccctgagacccccagccaccaacacacgtcaggcccaagcatt
cacctggtcgccctgaacgccccccaggggggtaacatgcggggtatcagaggggcagac
ttcctgtgtttcaaccaggctcgggccattgggctgaagggaaccttccgggctttcctc
tcctccaagctccaggacctttacagcatcgtccgcaagtcagacagagaccgcatgccc
atcgtcaacctaaaggatgaggtcctgtttgacagttgggaggccatcttcagtgactca
gagggcagagtgaaggacaacgtacccatctactccttcgatggcaaagacattttcaca
gacggcacatggccagacaagatgatatggcacggttcgaccagcagggggcacggccag
gtggataactactgtgagacttggcgtataggggagcgtgtgctgacaggcatggcctcc
tctctacaggggggccagctcctccaacagagaaccagcagctgtcacagctcctacgcc
gtgctctgcatcgagaacagctacatcggacagttcaagagatag
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integrated database retrieval system
