Oncorhynchus keta (chum salmon): 118377097
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Entry
118377097 CDS
T09424
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118377097 (snrnp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118377097 (snrnp40)
Spliceosome [BR:
oke03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118377097 (snrnp40)
Complex C
U5 SnRNP specific factors
118377097 (snrnp40)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Beta-prop_IP5PC_F
WD40_like
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
118377097
NCBI-ProteinID:
XP_052328259
LinkDB
All DBs
Position
20:complement(22062835..22068514)
Genome browser
AA seq
304 aa
AA seq
DB search
MIEPRKRPGDIALVPAGGVKRPRTELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMDLHYNTDGSLLFSASI
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVRLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLVYSMHGHGDSLTGLSLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSRLSRQVCICVG
HHVS
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgattgagccaaggaagaggccgggggacattgctttggttcctgccggcggagtaaag
aggcccaggacggagctgatcgcggcggcacagtcgcaacagctcgtggccatgggccct
ccccgcagctccagcctgcaggctcccatcatgctgatgtgtggccatgagggagaggtc
tactgctgcaagttccatcccaatggagccaccttggcctcctctggctatgacaggctc
atcttgatgtggaatgtgtatggggattgtgataactttgccaccctgaagggacacagt
ggagctgtgatggaccttcactacaacacagacggcagcctgctgttcagtgccagtata
gataagacggtgggagtgtgggacagtgagacgggcgagagaatcaagcgtctaaaaggc
cacacctccttcgttaactcctgctaccctgctcgacgcggaccccagctcgtctgtacc
ggcagtgacgacggaactgtcaggctgtgggacatccgtaagaagggggcagtccatacg
ttccaaaacacctaccaggtgttggctgtcacattcaacgacaccagcgaccagatcctg
tctgggggcatcgataatgacatcaaggtgtgggacctgaggcagaataagctggtctac
agtatgcatggtcatggtgattctctgactggactcagcctgagctcagaggggtcctac
ctcctctcaaactccatggacaacacagtgcgtatttgggacgtccgtccgtttgctccc
aaggagaggtgtgtgaagatattccaggggaacattcacaactttgagaagaaccttctg
aggtgttcctggtccgctgacggcagcaggctcagccgacaggtttgtatatgtgtggga
caccacgtctcgtag
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integrated database retrieval system
