Oncorhynchus keta (chum salmon): 118377361
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Entry
118377361 CDS
T09424
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118377361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118377361
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118377361
Spliceosome [BR:
oke03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118377361
Complex B
118377361
Complex C
U2 SnRNP specific factors
118377361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Adaptin_binding
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
118377361
NCBI-ProteinID:
XP_035620141
LinkDB
All DBs
Position
5:complement(24598182..24614940)
Genome browser
AA seq
927 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGGGKKEELRVPQKSHTSFGGAGTAGGYGKNQQLP
AFYKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFQSGGGSDSEDDPLDA
FMAQVEDQAAKDMKKLEEKEKEKKAEKGIRDDIEEEDEQEAYFRYMAENPTAGLTADDED
ENIDYDSDGNPIAPTTKKIIMPLPPMDHSEIDYPPFERNFYNEHEELLSLTGTEVFELRH
KLNLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIGIA
KTGSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRS
VAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGF
EYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEI
MPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQSER
NKVIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGV
AYTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGG
LGYRERPGLGAESSERSVGAAMGNYEGYSKTTGAMGDRMSAMKSAFQSQYKNHFVAASGM
VPKLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRGPPSLAMAPPAALGMGTKMAGFTSA
GSLSSVSDSQAPAPQGNAASPREGPRDRHGDDRSRHGDGHYRDRRDRSERHSGGGERDRY
GERDRHADRDRYGDKDRHGSSGRHGDSRNGEGSRRDRERDDCRGDRESGDRAGSEGRGDR
AEGKGDREENSFAVPDPPKRKKSRWDN
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggtggcccaagtggtaagcgagggtttgggtttggaggattttcc
cttggtggtggaggaggaggaggaggaaagaaagaagaactgcgcgtgcctcagaaatcc
cacacctccttcggaggcgcagggacagctggaggttatggcaagaaccagcaactccct
gcattctacaagataggaacaaaaagagcaaattttgatgaagagaatgcgtattttgaa
gatgatgaagaggagtcaagcagcacagatttgccatatatcccagctgagaactccccc
acacggcaacaattccagtctggagggggctcagacagtgaggatgatcctctggatgcc
ttcatggcccaagtggaggaccaagcagctaaagacatgaagaaactggaggaaaaagag
aaggaaaagaaggctgaaaagggtatacgtgatgacattgaagaggaagatgaacaagaa
gcctacttccgctacatggcagagaatcccacagctgggctgaccgcagatgacgaggat
gagaacatagactacgacagtgatgggaatcccattgcccccaccactaagaagatcatc
atgcccctgcccccgatggaccactctgagattgactacccaccttttgagaggaacttc
tacaacgagcatgaggagcttctcagcctgacaggcacagaggtgtttgagctgagacac
aaactcaacctgcgggtgtctggtgccgcccctcctaaactctccaccagcttcgcccac
tttgggtttgacgagcagctgatgcatataatccgcaagtcggagtacactcagccaaca
cctattcagtgccagggagttcccattgccctgagtgggcgtgacatgattggcattgca
aaaactggtagtggcaagactgcagccttcatctggcccatgctagttcacatcatggac
cagaaggaactggagactggagaggggcccatcgcagtcatcgtgtgccccaccagggag
ctctgtcagcagatccacgcggagtgtaagcgttttgggaaagcctactccctgcgctcg
gtggcggtgtatggaggaggcagcatgtgggagcaggccaaggctcttcaggagggagca
gagattgttgtgtgcaccccgggtcgtctgattgaccatgtgaaaaagaaggccacctct
ctgcagagagtgacatacctggtgtttgatgaggcagatagaatgtttgatatgggcttt
gagtatcaagtgagatccattgccagccatgtccgacctgatcgacagactcttctgttc
agcgccaccttccgtaagaagattgagaggctggcgagagatatcctggtggaccccatc
cgcgtggtgcagggagacatcggggaggccaatgaagatgtgacccaggtagtggagatc
atgcccagtggggtggagaagtggggctggctgacccgccgcctggtggagtttacctcc
tctggctctgtacttatcttcgtcaccaagaaggccaactgtgaagagctggctaccaac
ctgacccaggagggccacagcctgggcctgctgcacggagacatggaccagagtgagagg
aacaaggtcatcgcagacttcaagaagaagagtctgcccgtgctggtggccaccgacgtg
gcagcccgtggtctggatatcccttcaatacgcacagtagtgaactatgacgtggctcgg
gacatcgacacacacacacaccgaattggccgaactggtcgtgctggagaaaagggtgtt
gcctacacccttctcaccagtaaagacacatcatttgcaggagaccttgtgcgtaacctg
gagggagccaatcaaagtgtctctaaggagctgatggacttagcaatgcagaatccctgg
ttcaggaaatcacgcttcaagggcggcaaagggaagaagctaaacattggaggaggtggt
ctgggctacagagagaggccaggattgggagctgaaagttctgagcgtagtgttggtgct
gccatgggtaactatgagggctacagcaagactaccggagccatgggagaccgcatgtca
gcaatgaagtcagccttccagtctcagtataagaaccactttgtggcggcgtccggcatg
gttcctaaactcaccacgaagtccagtagctcttcaggctggaccagcgctggaagtctg
agctccgtccccaccggggcccctgagggcccagaccggccccgtggtcccccctcctta
gccatggcccctccagcagccctcggcatgggcaccaagatggcaggcttcaccagcgct
ggctccctgagctctgtgtcagacagccaggcccctgctcctcaggggaatgccgcctca
cccagggaagggccccgtgacagacatggtgatgacaggagtcgccatggagatggccac
tatcgtgacaggagagacaggagcgagcggcacagtggcgggggagagcgggaccgctac
ggggagcgggaccgccacgcagaccgcgacagatacggggacaaggatcgccatggcagc
agcgggcgccatggcgatagtcgtaatggagagggaagtagaagggacagagagcgagac
gattgtagaggtgacagggagagtggagacagggcagggagtgaaggaaggggggacaga
gctgaggggaaaggagaccgagaggaaaacagctttgcagtcccagatccaccaaaacgc
aaaaagagtaggtgggacaactaa
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