Oncorhynchus keta (chum salmon): 118377435
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Entry
118377435 CDS
T09424
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118377435
09122 Translation
03013 Nucleocytoplasmic transport
118377435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118377435
03041 Spliceosome [BR:
oke03041
]
118377435
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
118377435
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118377435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
118377435
NCBI-ProteinID:
XP_052334853
LinkDB
All DBs
Position
25:22244032..22270578
Genome browser
AA seq
683 aa
AA seq
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MSDALKKRKSKVLRSEMGTPEVKRGRGEGDQDVRVYSEEVELHGRDPEEDYQQYKLTCEA
LAQLMNDIQELKANGAKDGCAEVEQKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSIDEFYQEAPPEVSRTPLTKD
DTHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQRQTEIARHLPTSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLRCKDGSV
LHLFFYYLMNLNIMTVKAKVSTATDLTGAISAGELLNSGTLLNCLYANDQGCETPNPSNR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLKFPSDAPEGLHAGSSLSASHMESTMKLLR
GRVLSRLALHKQFSSLEHSIVPVSSDCKHLFPAKVLSRLARWTTITHQEYTNLVFTQHVS
EAGLARETDLFFMAILERGTARLQAAVVLNPRYPVISPLFAVSISWKGERSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLGVCLDVYLETDGQDDSVEGPREFPREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgccctgaagaagcgcaagtcgaaggttctccgcagcgagatgggcacacca
gaggtgaaacgtggccgtggagagggggaccaggatgtacgtgtgtatagtgaggaggtg
gagctgcatggcagggacccagaggaggactaccagcaatataaactaacctgtgaagct
ctggcccaactgatgaacgatatccaggagctgaaagccaacggcgccaaggatgggtgt
gctgaggtagaacagaagaggatgcagagctgtatccactttatgagtctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacgcatgagggcaagcag
agagtagatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagattagcaagtgtctggagttcaagtcaaagcatgaggagatagatcttgtgagt
atagatgagttctaccaggaggccccccctgaggtatcccgcacccccctcaccaaggat
gacacccaccaactcacgctggccaggctggactgggaactggagcaaaggaagaggctg
gctgagcagtacaaggagtctctctccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatccctc
ccagtccaggagtatctctccatgccgtttgaacagacccagagacagacagagatcgcc
cgccaccttcccacctctctctatgtcctactggtacaggccagtgcttacggacaggcc
tgcgataagagcctgagtgtgtccatcagtggagatgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggggattctgatgcagaggaggaacag
gagaaaacgaagaggaggagacctactacaggtggacagctggatgataagagacgtgaa
atgctgaagagacaccctctctccctctgcctagacctccgatgcaaagatggcagtgtg
ctgcatctgttcttctactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccgccacagatctcactggagccatcagcgccggggagctgttgaactctggcacg
ctgctcaactgcctgtatgccaacgaccaggggtgcgaaacgcccaacccctctaatcgc
taccagtttgataaagtggggatcagttcatttggagactacgtggcagaactgggtcat
ccctacctgtgggtgcagagtctgggaggactgaagttccccagtgacgccccagagggt
ttgcatgcaggcagttctctgagtgccagtcacatggaaagcaccatgaagctgctgaga
ggacgagtcctgtcacgcctggccctgcacaaacagttctcctcactagagcacagtatt
gttccagtgtccagtgactgcaagcacctgttccctgctaaggttctctctcgcctggct
cgctggactaccatcacacaccaggagtacacgaatctggtgttcacgcagcatgtgtca
gaagcaggtctggctcgggaaactgacctcttcttcatggccatattggagagaggaaca
gctcgtcttcaggctgcggtggtgttgaacccccgttacccagtcatttctcctctcttt
gctgtctcaatcagctggaagggggagcgcagtggacgtactgacgacaaccttcgagcc
atggagagtgaggtgaacgttttcaaatcagagctccaggggccccgcccaggccaccag
ctgctgacgaatcaggtagctcgtctgggtgtctgtctggatgtgtacctggaaactgat
ggacaggacgacagtgtggagggaccaagggagttccccagagagaagatgtgtctacgc
actgtcaggggtccgaaccgtctgaagccattcaagtacaaccacccccagggcttcttt
agtcaccgctga
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integrated database retrieval system
