Oncorhynchus keta (chum salmon): 118377442
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Entry
118377442 CDS
T09424
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118377442
04121 Ubiquitin system [BR:
oke04121
]
118377442
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118377442
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118377442
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118377442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-RING_UBOX
zf-RING_5
zf-C3HC4
zf-RING_2
zf-C3HC4_4
Ig_GEX2_N
Motif
Other DBs
NCBI-GeneID:
118377442
NCBI-ProteinID:
XP_052325393
LinkDB
All DBs
Position
19:10919635..10976295
Genome browser
AA seq
825 aa
AA seq
DB search
MASFSDSDLQTCLLCKELCGSSSATISCNSSTSSSSSHSSSSSSRRLHVLPCLHTFCRQC
LEGQRSHGDPLKLSCPTCNQNVSISEVGVDSLPSSNFLLSNLLDAEQLQLGQNKNGHRGV
GGCSVPRFHRAHSVLHPNRLGGPQCSSCGEGNPASFHCLDCQEYLCDNCVRAHQRVRLTK
DHFMESLQHASRGLASPIAGRGMGVGGGVGLSLTQPFQSKSSLLPLFQDRMSFCQHHDNK
VFLFFCETCSVPICRECSVGRHMGHSLVYLQDAVQDSRDIIIQLLADAQQGRQAVQLSME
KIQAIAEQVDIKAKVVQTEVKNVVLRHLKALEDRESQLLWKVEKIQQLKTKSLYLQVEKL
HQNLTKLDSTITAVTQVLDEGCHLDVLLARERMLTQIQELKSLKGLLQPQEDDRLMFTPP
EQALYIAIQSMGLISSGAFAPVTKAHGEGLKTALRGKTASFTVIGYDHDREPCLSGGDAV
SAVVMAAADGNLSAAEVCDNQNGSYTVSYLPKTEGEDLVSVLVCNQHIMGSPFKVLVKSG
RRYGALGSPVSAFGSEGEGDGQLCRPWGISVDKEGYVVVADRSNNRVQIFKPCGAFHHKF
GSLGSRPGQFDRPAGVACDSQQQIIVTDKDNHRVQVFTFDGQFMLTFGEKGTKNGQFNYP
WDVAVNSAGKILVSDTRNHRVQLFGPDGSFINKYGFEGTLWKHFDSPRGVAFNHEDHLVV
TDFNNHRLLVIRPDCQSARFLGSEGTGNGKFLRPQGIAVDQENRIIVADSRNHRVQVFEP
NGNFLCKFGTHGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttctcagactccgacctgcagacctgtcttctctgcaaggagctctgtggc
tcctcctccgctaccatctcttgcaactcctccacttcctcttcctcctctcactcgtcc
tcctcctcctcccggcgcctccatgtcctcccctgcctgcacaccttctgcagacagtgt
ctggagggccagcgcagtcatggggaccctctcaaactcagctgccccacctgcaaccag
aatgtctccatctccgaggtcggagtggactctctcccgtcctccaacttcctcttgagt
aaccttctggacgcggagcagctccaactcggccaaaataagaacggtcaccggggggtc
ggcgggtgctctgtacccaggttccaccgcgcccacagcgtgctccacccgaaccgtctg
ggagggccccagtgcagctcctgtggcgaggggaacccggccagcttccactgcctggac
tgccaggagtacctttgtgataactgcgtccgagcccatcagagggtccggttgaccaag
gaccacttcatggagagcctgcagcatgcaagccgaggcttggccagccccatcgcaggt
agaggcatgggggttgggggaggtgtagggttgtccctgacccagcccttccagtccaaa
tcctccctgctgcctttgttccaggataggatgagcttctgtcagcaccatgacaacaag
gtgtttctgtttttctgtgagacgtgctctgtgcctatctgtagggagtgtagtgtgggc
agacacatgggccacagcttggtctatctacaggacgctgtccaggactccagagacatc
atcatccagctactggccgacgcacagcaaggaagacaggctgtacagttgagtatggag
aagatccaggccatagcagagcaggtagacatcaaggccaaggtggtccagacagaggtg
aagaacgtggtcctcagacacctgaaagccttggaggacagagagagtcagctactctgg
aaggttgagaagatccaacagctgaaaaccaagtccctgtacctgcaggtagagaagctg
catcagaacctgaccaagctggacagcaccatcacagcagtcactcaggtgctggatgag
ggttgtcacctggacgtgctgctggccagagagcgcatgctgacccagatccaggagctg
aagtctctcaaaggcctgctgcagccacaggaggacgatcgtttaatgttcacccctcca
gaacaggccctgtacatagccatccagtccatggggttgatcagtagcggagcgttcgct
cccgtcaccaaagctcacggcgagggcctaaagaccgcactccgtggcaagaccgcctcc
ttcaccgtaattggctacgaccacgacagggagccctgcctctcgggcggtgacgcagtg
tcagcggtggtgatggcagcggcggatggtaacctgtcggctgcggaggtgtgtgacaac
cagaacgggtcgtacacggtcagctacttgcccaagactgagggagaagatttggtgtca
gttctggtctgtaaccagcacatcatgggcagccccttcaaggtactggtgaagtctgga
cgacgctacggggctctgggttcaccggtgtctgcgtttggcagtgagggggagggtgac
ggtcagctgtgtcgtccctggggcatcagtgtggataaagagggatacgtggtggtggcc
gaccgcagtaacaaccgcgtacagatcttcaagccgtgcggggccttccaccacaagttc
ggctccctgggctctcgccccggtcagtttgatcgtccagcgggcgtggcgtgcgacagc
caacagcagatcatcgtaacggacaaagacaaccaccgtgtgcaggtgttcacctttgac
ggacagtttatgctgacgttcggcgagaagggcactaagaacggtcagttcaactacccc
tgggatgtggcagtgaactctgcggggaagatcttggtctctgacaccaggaaccaccgc
gtccagctctttggccctgacggctcgttcatcaacaagtacggctttgagggcactctg
tggaaacactttgactcgccgcggggtgtcgcctttaaccatgaggaccacctggtcgtc
accgacttcaacaaccaccgtctgctggtgattcggccagattgccaatctgcccggttc
ctgggctccgagggtaccggtaacgggaagttcctgcgtccccagggcatagcggtggac
caggagaaccggatcatcgttgccgactcgaggaaccaccgtgtgcaagtgttcgagccc
aacgggaacttcttatgcaaatttggcacccatggcagtggcttcggacagatggaccgc
ccctccggtgttgctgtgacacccgacggagtcatcgtggtcgtcgacttcggaaacaac
cgcatcctcaagttctaa
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