Oncorhynchus keta (chum salmon): 118377533
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Entry
118377533 CDS
T09424
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118377533
Transcription factors [BR:
oke03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118377533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
DUF2408
MoCoBD_1
Motif
Other DBs
NCBI-GeneID:
118377533
NCBI-ProteinID:
XP_052339834
EnsemblRapid:
ENSOKEG00005019462
LinkDB
All DBs
Position
2:75877152..76104256
Genome browser
AA seq
839 aa
AA seq
DB search
MPSSAEVVSLGSGGGGPVAEGAIGGDERLSFRIMSSKQATSPFVSVTDGEEAMSQDHLSW
DKEESAEAHGAPQLPLHSLLHSKGSMDELQPLSSVPPESDWDSMVSAQQRMESDSNKVCS
LYSFRNNSTSPHKPEEGARERGDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQ
DESSCMETLLSKDWKEKMERLDTGDLLGEVKGTPESLVEKEHQLSTMITQLISLREQLLA
AHDEQKKLAASQMEKQRQQMELARQQQEQYYEEGCSMIARQQQQLLQQQHKINILQQQIQ
QVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGISYKPGDNYPVQFIPSTMAAAAAS
GLSPIQLQQLYAAQLASMQVSPGAKMPPLPQPPNNSGPISPSGLKNDKRSSSPITQVKEE
GTQPLNLSARPKTAELVKSPTSPTHSLFTGSKTSPNSLSKSGIPSPLGGMGRGSSLDILS
SLNSTALFGDQDAVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALTGMGLNNCSRADK
SWFTEYIERAHFESLGHHLSKLGEDGKIGHRVIDLTRPEDLDGWKALNGSGTGADKPQQY
YCWPTGGASTAEARVYREARGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNIS
KILGSRWKSMTNQEKQPFYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQ
MMRSRRQEMRQFFTVGQQPQIPISTNAGVVYPGAITMATTTPSPHMTSECSSASASPEPA
IPVIQSTYNMKIEPSAMLTNVPIINGEVDEMDMYEDFDEEPKSDYSSETETLEPIVSAN
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagcgctgaagttgtctctcttggatcgggaggaggaggaccagtggcggag
ggggccatcggtggagatgagcggctcagtttcagaataatgtcttccaagcaagccacc
tctccgtttgtctccgtcaccgatggggaggaagccatgagtcaggaccacctgtcctgg
gataaggaggagagtgccgaggcccacggggcgccccagctgcccctgcacagcctgctc
cacagcaagggctccatggacgaactgcagcccctcagcagtgtccctccagagagtgac
tgggacagcatggtgtcagcccagcagcgcatggaatctgacagcaataaagtatgttcc
ctgtactccttccggaataactcaacctccccacacaagcctgaggagggggcccgggag
cgcggcgacctgctgagcggatctgcgttcggaacgccggagcgccgcaaaggaagcctg
gccgacgtggtggacacactgaagcagaagaagctggaggagatgacaaagacagagcaa
gatgaatccagttgcatggaaacacttctgtcaaaagactggaaagagaagatggaaagg
ctcgacaccggtgatcttctgggagaagttaaaggtactccagagagcctggtagagaag
gagcaccagctgagcaccatgatcactcagctgatcagcctgagagagcagctcctggcc
gctcacgatgagcagaagaagctggccgcctcacagatggagaaacagagacagcaaatg
gagctggcccgccagcaacaggaacagtattatgaagaagggtgttccatgattgccaga
caacagcagcagcttctgcagcagcagcacaaaatcaatatcctccagcagcagattcag
caggtccagggtcacatgcctccgctcatgattcccatttttccacacgaccaacgcacc
ctggcagctgctgccgcagcccagcagggctttctcttcccaccgggaatctcttacaag
ccaggtgacaactacccggtgcagttcattccatccacaatggcagctgcggcagcgtca
ggactcagccccatccagcttcagcaactgtatgccgcccagcttgccagtatgcaggtc
tctcctggagccaaaatgccgccactcccccagcctcccaacaacagtgggcccatctct
ccctccggcctgaagaacgacaagagatcctccagccctatcactcaagtcaaggaggag
ggaacgcaacctctcaacctgtccgcccggcccaagacggcagagctggtcaagtccccc
acgtcccccacacacagcctgttcacaggcagcaagaccagccccaacagcctgtccaag
agcggcatccccagtcccctcggaggcatgggccgtgggtcttctctggacatcctgtcc
agcctgaactccacagcgctgttcggggaccaggatgcggtgatgaaggccatccaggag
gccaggaagatgagagaacagatccagagagagcagctgcagcaccaccagcagggcatg
gaggccaagctctctgccctcacaggcatgggcctcaacaactgcagcagggctgacaag
agctggttcactgagtacattgagcgggcacactttgagagccttggtcaccatcttagc
aaactgggagaggatggcaaaattggccacagagtcatcgacctcaccaggccagaggat
ctggatgggtggaaagctctgaatggctctggtaccggagcagataaaccacaacagtat
tattgttggcctacaggaggtgccagcacagccgaggcacgggtctacagagaagcccgg
gggaggaacagcaacgagccccacatcaagagacccatgaacgccttcatggtgtgggcc
aaagatgagcgccgcaagatcctccaagccttcccagacatgcacaactccaacatcagc
aagatcctgggctctcgctggaagtctatgaccaaccaggagaagcagccgttctatgag
gaacaggcccgtctcagtaagatccacctggagaagtaccccaactacaagtacaagccc
cggcccaagaggacctgcatcatcgacgggaagaagctccgcatcggcgagtacaagcag
atgatgcgctcgcgacggcaagagatgaggcagttcttcactgtggggcaacaaccgcaa
atccccatcagcaccaatgccggcgtggtctaccctggggccataaccatggcaacgacc
acaccctcccctcacatgacgtcggagtgctccagcgcctcagcaagcccggagccggcc
attcccgtcatccagagcacctacaacatgaagatagagcccagtgccatgttaaccaac
gtccccatcatcaacggagaggtagatgagatggacatgtacgaggactttgacgaggag
cccaaatcggactacagcagtgagactgagacactggagcccatcgtcagcgccaactga
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