Oncorhynchus keta (chum salmon): 118378130
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Entry
118378130 CDS
T09424
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118378130
09123 Folding, sorting and degradation
03018 RNA degradation
118378130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118378130
03041 Spliceosome [BR:
oke03041
]
118378130
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118378130
mRNA degradation factors
5'-3' decay
Lsm complex
118378130
Spliceosome [BR:
oke03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118378130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
118378130
NCBI-ProteinID:
XP_035620964
LinkDB
All DBs
Position
28:77363955..77367945
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AA seq
91 aa
AA seq
DB search
MAATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcagccactccagcgacaaatccgtcacagttgctcccacttgagctcgtggacaaa
tgtataggttcccgaatccatatcgtcatgaagaacgacaaagaaattgttggcaccctg
ttgggtttcgatgattttgtcaacatggtgcttgaggacgtgacagaatttgaaatcaca
ccggagggaaggaggatcaccaaactggatcagatactgctcaatggcaacaacatcacc
atgctcatacctggaggagaagggcccgaagtatga
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