Oncorhynchus keta (chum salmon): 118378418
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Entry
118378418 CDS
T09424
Symbol
tarbp1
Name
(RefSeq) LOW QUALITY PROTEIN: probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oke03016
]
118378418 (tarbp1)
03036 Chromosome and associated proteins [BR:
oke03036
]
118378418 (tarbp1)
Enzymes [BR:
oke01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
118378418 (tarbp1)
Transfer RNA biogenesis [BR:
oke03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
118378418 (tarbp1)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118378418 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
118378418
NCBI-ProteinID:
XP_052370258
LinkDB
All DBs
Position
Unknown
AA seq
1949 aa
AA seq
DB search
MSSILINALLSSCHDPDTLFNTLCWPTDSWPDTERVEALTTFIDGIGKLPQSDTSDDGDK
VAFSIAKRDIFLRKVESIIWTQCLPLLLKVSNGDEACKGKRVPDGRAEITIAVCRLLSVC
INTLCDTVVSGRVARAVLPSFQLPDGETEEELPGQGEGRLGIDVAIEAMSVILPALSSNE
ELTTSILSSALSCIKTLPDALVSKITVRIIFTLLNCYSEDGIASKLRLILEDLCSWHKSD
SSNTDSPVVTERALLCLTTLSDYLFSPAKLQQHTLPQSLSYTRPDPRRSLQFWTILQDGL
THKDNVSRKRALYLLKRCVALSEDEAVEFPSSSGSSEDNEEIIFRWAPDRCKLLREFWED
YALVMETLEENQIHVVRPVLNRIHTLIQTAANDSQGVSLFHPSWLLGVYQRMFHSENKSV
MREGVDHLLELQVLRRPAFALAFSQFILGPFMDVMSESSLFHRTAGQSVGECPELGVKLQ
VFMVTFFSSLPQENRGPVLLQLVQRLGSQHWCAVPILFLSRALSHLPPCPLLGPDGLQAL
REVLRCTMITHQVLLRGAAQCFLLNSALSLTDVTLVTLDDVFSLLVHFRADESLRRGTPL
WNQVLCGGGMRKSSVLWNQVLCGGGMRKSSVLWNQVLCGGGMRKSSVLWNQVLCGGGMRK
SSVLWNQVLCGGGMRKSSVLWNQVLCGGGMRKSSVLWNQVLCGGGMRKSSVLWNQVLCGG
GMRKSSVLWNQVLCGGGMRKSSVLWNQVLCGGGMRKSSVLWNQVLCGGGMRKSSVLWNQV
LCGGGMRKSSVLWNQVLCGGGMRKSSVLWNQLCDWLADSEGSFRPCVRDSADGTSTSPER
ETVRGYVQHQMELFLRVPASTDQTDSVPDPGEAELLAKAILLCVDIEGRTQRSGGEQTTG
VSGGMDSLLHPLLDTLSRLHTNVYLPLRKTDKSLQLLLRLLQLTPARHTPAAVLQLTPAR
HTPAAVLQLTPARHTPAADLQLTPARHTPAAVLEEQARHTPAADLQLTPARHTPAAVENE
QEDSVTVSMETLVLGVVEPIQEFILRRLSGELQELCDVERAELYLSVLKEVVLMYSVLEW
NHSKVQEAYFPRLLRYVLRTLEADQIPSVAGQVSRAVAMASLAMTCEVAALGVFNLQSET
TILLVHLSSYFYSPAPPPAPPLSLVNFNQTLLKPPTAAQSTGVSEQGPLLKDWGRMAAHF
IRDQWTCLGYGRRIGPPGPLELPRASGSLQAAIEALSLLPSGLVLPVLDFMASMLPKVVL
SEEALCVEAVTVSWKLVLGLSSNPHDFWPTLQGFVTMAFHHSLLELTEEQAPGLTVTLQQ
VTRGRHGVSTPGFTVTLQQIAVELMELSQAKTGVFNVLIQHCCHTWLPSDPGSEGQSQSH
AMFSSALLHLDILAEACVYGPVFRRDQRLIQEVQVYVERLGEECAANTAVPSDNRDDQFP
RVCVVAFLSRLQPSNQLHERLMEELVLCLLKKDEAISKSKQRYYSNSLQHRVKNRVWQTL
LMLLPKLRGEFVGTVLGRVFEAGFVSNQASVKYLIEWKMVLILVQYPEHIDRLWACFSVD
QEKTKTSVCTFLSVLVHLNIIMPQLKEKAVQWCKALDVILQWCFSHNFSVRLYALLALKR
VWGLEGARAEEGAGGADGLGGLATVVKACLHQAEAMQSTGNGSKNWTRIQDHFFFGVFHP
VRDYSVETIFYTFPSLSEVFEDEWIPPWKFEKLVDFCQSASLPLRNPVPDLSQIQPGDWI
QQDKGDQDGEERWAEVQKKMTPWRLGIQEQEPELGLVPQQRAARLGKLHSALLVVASLID
KPTNLGGLCRTCEIFGASALVLDSLRHVSDKHFQALSVSSELWLPLLEVKPVELADFLQL
KKKEGYCIVGVEQTANSQSLKDYKFPEKTLLLLGNEREGIPANLLQLLDVCVEIPQQGVI
RSLNVHVSAALLVWEYTRQYLPSTGVKSD
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctattttaatcaatgcccttttatcaagttgccatgatccggatactttgttt
aacacgttgtgctggccaactgactcgtggccggacacagaaagagtagaggcactgaca
acgtttattgatggaattggtaaactaccccagtctgacacatctgacgatggcgacaaa
gtggccttttcaattgcaaaaagagacatctttctacgaaaagttgaatcgatcatttgg
acacaatgtttaccacttctcttgaaagtctctaacggagacgaggcgtgcaaaggtaaa
cgtgtgccagatggaagggctgaaataaccatcgctgtgtgcaggcttctttctgtctgc
atcaacacactgtgtgacacggtagtttcggggcgagtcgcccgcgctgtcctgccatcc
ttccagctgccagacggggagacagaggaagagcttcccggccagggtgaggggcggctg
ggtatcgacgtggctatcgaagccatgtcagtcatcctacccgctctctcatccaacgaa
gaattgaccacgtcgatcctctcatctgccctgtcctgtatcaagacgttgccggatgct
ctggtctccaaaatcaccgttcggattattttcactctcctcaactgctacagcgaggat
gggatagcgagtaaactccggttgattttagaggatttgtgtagttggcacaagagtgac
agctcaaacacggactcacctgtggtgacagaacgcgccttgctgtgtttaacaactctc
tcggactatctcttctctccggctaaactacagcaacacacccttcctcaaagtctgagc
tatactcgacctgaccctcgtcgttctctgcagttctggacgattctacaagatggactg
acgcacaaagacaacgtgtcccggaagcgggcgttgtacctgctgaaaaggtgtgtcgct
ctgtcagaggatgaggcggttgagtttccaagcagttcagggtcaagtgaagataatgag
gagatcatattcagatgggcgccagacagatgcaagctgctcagagagttctgggaggac
tatgccttggttatggagacactggaggagaaccagattcacgtggtccgccctgtgctc
aacagaatccatacgttgatccaaacagcagccaatgatagtcaaggcgtcagtctgttc
cacccgtcatggctgctgggtgtgtaccaacgtatgttccacagtgagaacaagtccgtc
atgagagagggagtggatcacctactggaactccaggtgctccgacgccctgccttcgcc
ctggccttctcacagttcattctgggtcctttcatggatgtgatgtctgaaagctccctc
tttcacaggactgcaggacagagtgtaggagagtgtcctgagctgggagtcaagctgcag
gtcttcatggtcacgttcttcagcagcctgccacaggagaacagaggtcctgtgttgctg
cagcttgtccagcggctaggttctcaacactggtgtgctgtccccatcctcttcctctct
cgggccctgtcccaccttcctccctgccctctcctgggccccgacggcctgcaagctctc
agggaggtgctccgctgcactatgatcacccaccaggtgctactgagaggagctgcccag
tgtttcctgctgaacagtgccctctccctgacagatgtgaccttagtgacattggatgat
gtgtttagtttgctggtgcatttcagagcagacgagtctctacgtagaggaacaccgctc
tggaatcaggtactgtgtgggggtggaatgaggaagagctctgtcctctggaatcaggta
ctgtgtgggggtggaatgaggaagagctctgttctctggaatcaggtactgtgtgggggt
ggaatgaggaagagctctgtcctctggaatcaggtactgtgtgggggtggaatgaggaag
agctctgtcctctggaatcaggtactgtgtgggggtggaatgaggaagagctctgtcctc
tggaatcaggtactgtgtgggggtggaatgaggaagagctctgtcctctggaatcaggta
ctgtgtgggggtggaatgaggaagagctctgtcctctggaatcaggtactgtgtgggggt
ggaatgaggaagagctctgtcctctggaatcaggtactgtgtgggggtggaatgaggaag
agctctgtcctctggaatcaggtactgtgtgggggtggaatgaggaagagctctgtcctc
tggaatcaggtactgtgtgggggtggaatgaggaagagctctgtcctctggaatcaggta
ctgtgtgggggtggaatgaggaagagctctgtcctctggaatcaggtactgtgtgggggt
ggaatgaggaagagctctgtcctctggaatcagctgtgtgactggctggctgacagtgaa
ggcagcttcaggccctgtgtcagagattcagctgatggtaccagtacttctccagagaga
gagactgtgagaggctacgtccaacaccaaatggagctcttcctcagagtcccagctagc
acagaccagacagacagtgtcccagacccaggagaggcggagctgcttgccaaggccatc
ctactgtgtgttgacatagaggggaggactcagaggtctggaggagagcagactactggt
gtcagcggtgggatggactcgctcttacaccccctactggacacactgagcaggctccac
actaatgtctacctgccgctacgcaagactgacaagagcctgcagctgctgctacgacta
ttgcagctcacaccagccagacacacccctgctgcagtactgcagctcacaccagccaga
cacacccctgctgcagtactacagcttacaccagccagacacacccctgctgcagacctg
cagctcacaccagccagacacacccctgctgcagtactagaagaacaagccagacacacc
cctgctgcagacctgcagctcacaccagccagacacacccctgctgcagtagagaatgaa
caagaagacagtgtgacggtctccatggaaacgttggttctgggcgtggtggagcccatt
caggagtttatcctccgaagactgagtggagaactacaggagctatgtgatgtagagcgt
gctgagctctacctgtcagtgctgaaggaggtggtgctgatgtacagtgtgttagagtgg
aaccactccaaggtacaggaggcctatttccccagactcctccgatacgtcctgaggacc
ctagaagctgaccagatcccctctgtggcgggtcaggtgtccagggcggttgccatggcg
tcgttggccatgacctgtgaggttgcagcgttgggagtgttcaacctccaatcagagacc
acgattctactggtccatctgtctagctacttctactcccctgcgccacccccagcccct
cctctctctctggtcaacttcaaccagaccctgctgaaacctccaactgcagctcagtca
acaggtgtttcagagcagggtcctctcctcaaggactggggccgtatggcagctcatttc
atccgggaccagtggacgtgcctgggatacgggaggcgaataggcccacccgggcccctg
gagctccccagggcgtcagggtccctccaggctgctatagaggctctgtctctgctaccc
agtggcctggtactgcctgtactggacttcatggcctccatgttgccaaaggtggtgctg
tctgaggaggccctgtgtgtagaggctgtgactgtctcctggaagctggtgctgggactg
agcagtaaccctcatgacttttggcccaccctgcagggctttgtgaccatggcctttcac
cacagcctgctggagttaacagaggagcaggcacctgggctcactgttactctacaacag
gtaactagagggaggcatggggtatcaacacctgggttcactgttactctacaacagata
gccgttgagttgatggaactctcccaggccaagaccggtgtattcaacgttctgatccaa
cactgctgccacacctggctgccctctgacccaggaagtgaaggccagagccaatcacat
gccatgttttccagtgcccttctgcaccttgacatcctggctgaggcatgtgtgtatgga
cctgtgttcaggagggaccagaggctgatccaggaggttcaggtctatgtggagaggctt
ggagaggagtgtgctgctaacactgcagtccccagtgataaccgggatgaccagttccca
cgtgtgtgtgtcgtggcgttcctcagccgcctccagccctccaatcagctgcatgagaga
ctgatggaagaactggttctctgcttgctgaaaaaggatgaggccatatcgaagtcaaaa
cagcgttactatagcaactccctgcagcatcgtgtcaagaacagggtgtggcagacacta
ctgatgctgctgcccaaactgagaggggagtttgtaggtaccgttctgggtcgtgtgttt
gaggcaggtttcgtcagtaaccaggcctcagtcaagtacctgatagagtggaagatggtt
ctaatcctagtccagtatcctgaacacatagaccgactctgggcctgcttcagtgtggat
caagaaaagaccaagaccagtgtctgtaccttcctgtctgtgttggtccacctcaacatc
atcatgcctcaactcaaggagaaggcagtacagtggtgtaaggccctggatgttattctc
cagtggtgtttcagccataacttcagtgttcgtctgtacgccctgctggccctgaagagg
gtgtggggtctggagggggcgagggccgaggagggggccgggggggcggatgggctcggg
gggctggccaccgtcgttaaggcctgtctgcaccaggctgaggccatgcagagtactgga
aatggcagtaagaactggaccaggattcaggaccacttcttctttggtgtctttcatcct
gttagagactatagtgtggaaaccatattctacacattccccagcctatcagaggtgttt
gaggacgagtggattccgccctggaagtttgagaagttggtggacttctgccagagtgca
tctctcccgttgaggaaccctgtccctgacctgagccagattcagcctggagactggatc
cagcaggataaaggggatcaggatggtgaggagcgctgggccgaggtccagaagaagatg
accccctggaggttggggatccaggaacaggagccagagctgggtctggtgccccagcag
agagcagcacgcctgggcaagctgcacagtgccctcctggtggttgcctcactcatagac
aagcccaccaacctgggaggtctgtgtaggacatgtgagatctttggggccagtgctctg
gtgttggacagtcttcgccacgtcagtgataaacacttccaggccctgagtgtctcctct
gagctatggctccccctactggaggtgaagcccgtagaactagctgacttcttgcagctg
aagaagaaggagggctactgcattgtgggagtggagcagacagccaatagtcagagtcta
aaggactacaagttccctgagaagactctgttactgctgggtaatgagcgtgagggtatc
ccagctaacctgctccagctgctggatgtgtgtgtggagatccctcagcaaggtgtcatc
cgttccctcaacgtacacgtgagcgccgccctgctggtgtgggagtacacccgccagtac
ctgccctctactggagtgaagtcagactga
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integrated database retrieval system
