Oncorhynchus keta (chum salmon): 118378590
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Entry
118378590 CDS
T09424
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke02010
ABC transporters
oke04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118378590
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118378590
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oke02000
]
118378590
Transporters [BR:
oke02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
118378590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
118378590
NCBI-ProteinID:
XP_035621466
LinkDB
All DBs
Position
4:complement(55050612..55102313)
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRKRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKGLIQALKTLQANTKGFKLKDFLHNNETLSTFLLRNASFSEHAVRQIIEADVNLE
KVLVKGFGVHLRDLCGSNGTRVEDFVTITDSKVSSLVQKMLCVSPGSWLNQAESHFLHNL
DFLKPIRKDVRTDPEAVQQVAKATDKLLESLGSLALELASMKSWRDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTNGEEPISAYDNTSTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELGVLRELG
GMWEEIKPKVWTFMESSGHMDLVRTLLKNNGTGSFFTSKLAGSEWTVEDVSNFLTKHSQD
LHPHGTAVTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITAVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKILASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGEHRKTDFSQNKRRSCEAVCIEEEPA
HLKTGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLQYRLGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPFLSSCRNSSSTVSLTKKEEDCPSESSSDAGLGSEHESEVATIETAQAASICESAFVP
PDVSLISSLIFKHVPAARMVENLGHELIYVLPYGAAKDGAFVELFKDMDNHLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPLRRRRRNHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDADPESRETDFLSGSDGKGSYKVTGWNLKRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQRLLSA
LTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETLLELFRTGNWTMEEPSPACACSC
DGRKKMLPECPAGAGGLPPPQMKISETDTLQNLTNRNISDYLVKTYAEIIGKSLKNKIWV
NEFRYGGFSLGARSTNVLPAADEIDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRSNLPPGKDPSKFGIRAFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGQGDILELRQLTKVYKRKQKPVVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGADPDLPPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVMDTTPL
SSRQAEEKLAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgttgttgtggaagaactttacctacaggaaaagg
caaacgctccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgaatgtcatttccccaacaaggcc
atgccctcggcgggcaccctgccctggatccaaggcatcatctgcaatgccaacaacccc
tgcttccgcaaccccactcctggagagtcccccggggtcgtgggcaacttcaacgagtcc
ataatctctcgtctgttctccgatgccaagaagatcctgctgtacagtcagaatgaccgg
aatctggatggctttaaaggcctcatccaagccctgaagaccctacaggccaacaccaaa
ggattcaagctgaaggatttcctccacaacaatgagaccctgtccactttccttctgcga
aacgcttccttctcggaacacgccgtgcgccagatcattgaggccgatgtgaacttggaa
aaggtgctggtcaaaggcttcggtgtccacctgagggacttgtgcggcagcaacggcacc
agagtagaggactttgtgaccatcacagacagcaaggtgtccagtctggtccagaagatg
ctctgcgtgtccccaggctcctggctcaaccaggcagaaagccacttcctccacaacctg
gacttcctcaaacccatacggaaagatgtgaggactgaccctgaagccgtccagcaggtg
gccaaggctacagacaaactcctggagagcctgggctccctggccttggagctggccagc
atgaagagttggagagacctgcgtaatgagatcatcttcctcacggagaacgccacatcc
tcccccagccacatgtaccaggctgtgtcgcgcatcgtctgtggccatcccgagggtggc
ggactaaagatcaagtccctcaactggtacgaggacaacaactacaaggctctgttcggc
aaccacaacacaaccaacggagaggagcccatctctgcctacgacaacacatccactcca
tactgtaacgctatgatgaggaacatggagtccagccccgtgtccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctgtacacccccgacaccccagccacacag
aagatcatccacgaggtgaacagaacattccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaaattaagcccaaggtctggaccttcatggagagcagcggacacatg
gacctagtaaggaccctattgaagaacaatggcactggcagcttcttcacctccaaactg
gcgggctcagagtggactgtggaggacgtctccaacttcctgaccaaacattcgcaggac
ctgcatccccacggtacagccgtcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagcctgtggcc
aatgaggaaaggatggtcaacaaatccatggcgctcctggacgataggaagttctgggcg
gggattgtgtttccagatattgaggccaacagctctgaactgccggccaacgtcaactac
aagatccgcatggacatcgataacgtggagcgcaccaacaagatcaaagacggatattgg
gaccctggtcctcgtgctgacccatttgaggacctgcgctacatctggggtggcttctct
tacctccaggacatcatcgagcatagcatcatcacagcagtaactggcgtcaaggagaag
acgggagtctacatccaacagatgccctatccctgctacgtggacgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtgtatgagaaggaggcaaggctcaaggagaccatgaggatcatg
ggattggacaatggcatcctgtggttcagctggttcatcagcagcctcatccccctgcta
atttctgccggcctgctggttgtgctgctcaagatggggaacctgctgccctacagtgac
cccggcgtcatcttcctgttcctggggtcctttgccgtggtaaccatcatgcagtgcttc
ctcatcagcacaatgtttgcccgtgccaacttggcggcggcatgcgggggcatcatctat
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactatgtgggctttggg
gccaaaatactcgctagcctgctgtccccagtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccagtggaacaacctgttcaatagccccatg
gaggaggacgacttcagcctgaccaccgccatcatcatgatgtactttgactccttcctc
tacatggtgatgacctggtacatcgagtctgtcttccctggtcagtatggtattcccagg
ccctggtactttctcttctccaagtcctactggtttggagaaggggaacacaggaagact
gacttcagtcagaacaagagaaggagctgtgaagctgtctgtatagaggaagagccagcc
cacctgaaaactggtgtcttcatagagaacctagtcaaggtgtaccggcacgggaagaag
ctggctgtggatgggctgactctgggcttctacgaaggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccactatgtcgattctaacgggactgtttccgcctacc
tccggcactgcttacatcatgggaaaagacatccgatcggagctgagtgctattcgacag
agtctgggcgtttgtccacagcacaacgttctattcagcatgctgaccgttgaggagcac
atctggttctatgctcgcctgaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcctgatagatactggcctgccacacaaacgcacttccaggaccagcacactatct
ggagggatgcagaggaagctctctgtggctctggcctttgtcggggggtcaaaggttgtg
attctggacgagcccacagccggggtcgacccctacgcccgcaggggcatctgggacctc
ttgctccaatatcgtctaggtcgtaccatcatcctctccacccaccacatggacgaggcg
gacatcttgggcgaccgcattgccatcatctcccatggcaagctgtgctgcgtgggctcc
tccctcttcctgaagaaccagctgggtacaggctactacctcaccctggtcaagaagggc
ccagaacctttcctcagctcctgccgcaactcctccagtaccgtctccttaactaagaag
gaggaggattgtccctctgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagtagctactatagaaactgctcaggcagcttccatctgtgaaagtgccttcgtgccc
cccgacgtctccctgatctccagcctgatcttcaagcacgtcccggccgcccgcatggtg
gaaaaccttggccacgagctcatctacgtcctaccctacggcgccgccaaggacggagcc
ttcgtggagctcttcaaggacatggacaatcacctccctgacctgggcatatccagctat
ggcgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaatggagtt
gacactgaagttccctcagacggtacactccccctgcgcagacgtcgtagaaatcatgcc
tttggtggaggaaatgccttcggtggagaccaccagagctgccttagaccccagattgat
gacgacaacaatgaacataacgactcggacgcagacccagaatccagagagacagacttc
ttgagcggatcggacggtaaaggctcctacaaggtgacgggatggaatctgaagaggcag
cagtttgtggccttgatttggaagaggtttctgtacgctcaacgctccagaaaaggtttc
tttgctcagattgtactccctgctgtgtttgtgtgcattgccctggtcttcagtctcatc
gtcccacctttcggaaagtaccccagtctggagctgcagccatggatgtacgaagaacag
tccctcttcatcagcgatgacgcccctgaagacgctagcacacaacggttattgagtgcc
ctcaccgaaggacctgggtttggaacgcgctgcatggaaggacagcccatacctgacact
ccctgtacgatgggtgatgaagactggtccataccggaggtcccagagacccttctggaa
ctcttccgcacaggtaactggaccatggaggagccgtcccccgcatgcgcctgcagctgt
gacggccgcaagaaaatgctccctgagtgtcctgctggagccggaggactgccaccacct
cagatgaagatcagtgagacagacaccctgcaaaatctgaccaacagaaacatctctgac
tatctggtgaagacctatgcagagatcattgggaaaagtttgaagaacaaaatctgggta
aatgaatttaggtacggaggcttctcattgggtgccaggagcaccaacgtcctccccgca
gctgacgaaattgacgacgccatcgctcgagtgaggaagatttttgaattggagaagggt
gcagccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaagggatggcacagcatgggagccttcctcaac
gtgatgaacaacggcatcctgcgctccaacctgccccctggcaaggaccccagcaagttt
ggcatccgcgccttcaaccacccgctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtcctggtgtccatctgcgtgatctttgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctttactggactgccaacttcatctgggatatg
tgtaactacatcgtcccggcaacgctcgtcatcatcatcttcgtctgcttccaacaaaag
gcctatgtgtcgtccaccaacctgccagtgctggccctgctgctgctcctctatggctgg
tctatcactcccctgatgtacccggcatccttcttctttaagatccccagtacggcctac
gtggtgctgacctccgtcaacatcctcatcggcatcaacggcagcatctccaccttcgtc
atggagctcttcggagacaacgaaattgggggtatcaacaacatcctgaagaacgttttg
ctgatcttccctcacttctgtcttggccgaggtctcatcgacatggtgaagaaccaggcc
atggccgacgctctggagagatttggtgagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtccttttccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtgggtgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cagggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcaaaagcca
gttgtagaccgcctgtgtgtgggcatccctcctggagagtgctttggcctcctgggtgtg
aacggagctggaaagaccaccacattcaaaatgctgacaggagactccatggtcaccagt
ggagaagctttcctggctggaaaaagtatactgcgggagatagacgaagtgcaccagaac
atgggctactgtccccagtttgacgccatcaacgaactgctgacaggcagagagcacctg
gagttctacgcagtcctgcgtggagtgcccgagaaggaagtgtgtgaggttgctgaatgg
ggcatccgtaagctgggcctagtaaagtatgtggacaaggcagcaggaagctacagcgga
ggaaacatgaggaaactctccacggccatggccctaataggaggaccacccgtcgtgttc
ctggacgagcccactactgggatggaccccaaagcgcgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccttgtgcaccagaatggccatcatggtcaacggcagattccgttgcttggggagc
gttcagcacctaaagaataggttcggagacgggtacaccatcatcctgcgtgtggcgggg
gcggaccctgacctgccgccggtgatgaagttcattgagagcgagctgccgggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgccctcctctctcacctccctg
gcgcacatcttcagcatcctggccaagaacaaggacctgcttcggatagaagactactct
gtgtcgcagaccacactggaccaggtgtttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagttaagcgcaaagaggcggtgatggacactaccccgctc
agctcgcggcaggctgaagagaagctagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
