Oncorhynchus keta (chum salmon): 118378592
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Entry
118378592 CDS
T09424
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4-like isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118378592
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oke02000
]
118378592
Transporters [BR:
oke02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
118378592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
118378592
NCBI-ProteinID:
XP_052331922
LinkDB
All DBs
Position
23:3266404..3406873
Genome browser
AA seq
2331 aa
AA seq
DB search
MNTGSQIRLLLWKNWTLRKRQKTRFLVEILWPVILFIGLVWLRKANPLYKQHECHFPNKA
MPSTGIIPWIQGIFCNANNPCFKHPTRAEGPGVVSNYNNCILARFWADSNELLFDDPEFQ
QLGRLWEDMAVMNNFMDTICNTPEQIAGRGLKIEDILKDDEMLTAFLLRDVGLSESVVHQ
LVNAQVRPEQFAHGVPDLHLKDIACSQALLERFIIFPSRRGMYGVRNAMCALTQQRLQKI
EDMLYANVDFFKIFRLLPRVLDNHTDGPDLRYWGRVLNAVSEKVQVLFERNSTKDLLKIV
YPLFRAGGPSSFSQLMSIVSALFCGYPDGEGSRVLSFNWYEDNNYKVFLGVNGSKNHDYV
YDMTTTPFCNDLMQTLESNPVTKIVWSSVKPLFMGKILYAPDSPAIRLILKSANTTFEEL
ERLMTMGKAWEEVGPQIWRFFNAGIQINMIRDTIRNPTVADLIDRSMEDTEFSSKDILNF
LYNGLEEDREETMPSFDWRNVFNLTDQAVRMFNQYGECISLDKFRPHTDEDQLTHQALFL
LEENKFWAGLVFLDVYPWTTTVPRHVRYKIRMDIDQVERTNKIKDRYWDPGPRADPMEDL
RYVWGGFAYLQDMVEHGILKIQTGHDWPLGVYVQQMPYPCYVDDLFMLTLNRCFPIFMVL
AWIYSVSMTVKSIVLEKELRLKETLKAMGVTNGVIWYTWFIDSFIMMTASTALLTLIIMA
GKVLNYSNPLVVFLFLLTFTMATIMQCFLLSVFFNKANLAAACSGIIYFTLYLPHILCVA
WQDRITKNAKITASLLSPVAFGFGTEYLSRYEEQGLGLQWDNIGTSPLEGDAYSFFTSIG
MMMFDAVLYGFLAWYLDNVFPGQYGIGRPFYFPFQPSYWQRSEPTLSNIPDSDPEKPDVD
KDVDSMCSPRRCNGVGVKKPCKHQDKRERMEREREELLKRQEEEQNKEEQEEDLTGQLFF
EPEPAGLTVGVEIQDLVKVFPGGSRPAVDHLSIAFYEGQITSFLGHNGAGKTTTMSILTG
LFPPTSGTAFINGRDIRTDMDSIRTSMGMCPQYNILFKHLTVEEHILFYSMLKGTSQAEA
QQAVNVMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGGSKIVILDEPTSGVDPYSRR
SIWDLLLKYRTGRTVILSTHHMDEADLLSDRVAIISKGQLHCCGSPLFLKNCFGVGFYLT
LVRRMKDVRKKENECDCASECSCTCSTCTKVKEESQGQSQQLERALDGDVDNITTLIHHH
VPEAKLIEAIGQELTFLLPNKGFKHRAYASLFRELEETLGDMGLSSFGISDTSLEEIFLK
VTADGEEAAANAKTPEQWMLLKRTKSCSKVGVEEGEPEEANGLKQANGGGNHDDDSAGKG
SSQVKGANLVMQQFLALLVKRFHHATRSYKDFLAQIVLPASFVLIALIFTMIVPPFGEYP
PLILTPWMYGKQLTFFSNERLENLQMRHFTKVLLNPPGLGTRCMAGSPLQNLPCENETLA
WETPAVSSIANNILQSPEWHQLNPSPSCQCSSNKKLTMLPICPIGAGGLPPMQRKEATGD
ILLDLTDRNITDYLVKTYPSLIRQSLKSKYWVNEQRYGGLSVGGQLPILEVSPKQIQDTL
SQLMKMLNVTGGPYTKQSLQEIGPFLRYMESEYNVKVWYNNKGWHAMVAFMNVANNAILR
AHLPRDVDPMQYGITAINHPLNLTKEQLSEVTVLKTSVDAVTAICVIFAMSFIPASFVLY
LIQERVTKAKHLQFVSGVSPLVYWLANFFWDMMNYSLSTAMVVGIFVAFDKKCYTSPTNL
PALVLLLLLYGWSITPMMYPMSYIFNIPSTAYVSLSCINLFIGINSSALTFILELFENNR
ALLEFNEWLKKGLLVFPHFCLGRGLIDMAMNQAVTDVYAHFGEDRAMDPFKWDFVGKNLV
FMAIEGCVYFLFTILIEYRFFLDHWLSDFRGPPPKDEDEDVAAERERIYNGGNKSDILQI
RDLCKTYSGKTRQAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVSSGEATVSG
YSVLSDMLDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPESDISRVADWGIQKLGL
SEYAGRCAGTYSGGNKRKLSTAIAMIGCPALVLLDEPTTGMDPHSRRFLWTAIMSVIQDG
RAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGDGYVVTMKVKAAKAGVSP
ELGPAESFMESSFPGCVQREKHYNTLQYEIASSSLARIFQLVVANKDKLNIEDYSVSQTT
LDQVFVNFAKQQAGEDEDVLQPRAVNARNEKQNVPTKRKVSPIKIKTRRPK
NT seq
6996 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaggaagtcagattcgccttctgctgtggaagaattggactctacgcaagaga
cagaagacccgcttcctggtggagattctgtggccggtgattctgttcattggtctggtg
tggttgaggaaagccaaccctctttacaaacaacatgaatgtcacttccccaacaaggcc
atgccttccacaggtatcatcccatggatccagggtatcttctgtaacgccaacaacccc
tgcttcaaacaccctaccagggcagagggccctggggtcgtctccaactacaacaactgc
atactggcgcggttctgggctgactccaatgagttgttgtttgacgacccagagttccag
cagttgggtcggctgtgggaggacatggccgtcatgaacaacttcatggacaccatctgt
aacacaccagaacagatagccggtcgaggtctgaagatagaggatatcctgaaggatgat
gagatgttgacagccttcctgctgagagacgttggcctgtcagagtctgtggttcatcag
ctggtcaacgctcaagtccgtccagaacagtttgcccacggtgttccagacctccacttg
aaggacatcgcctgcagccaggctcttctggagaggtttataatcttccccagccggaga
ggcatgtacggagtacgtaacgccatgtgtgccctgacacagcagcgcctgcagaagata
gaggacatgctctatgctaatgttgacttcttcaagatcttcagactgctgccccgggtg
ttggacaaccacacggacggaccagacctacgatactgggggcgtgttctaaacgctgta
tcagagaaggtccaagtgctctttgagagaaacagcaccaaggaccttctgaagattgtc
tatccgttgttccgggctggtggtcccagctcctttagccagctgatgagcattgtgtct
gccctgttctgtgggtacccagacggagagggatccagggtcctctccttcaactggtac
gaagacaacaactacaaggtgttcctgggggtgaatggatccaagaaccacgactatgtc
tacgacatgacaaccactccgttctgtaacgacctgatgcagactctggagtctaacccg
gtcactaagatcgtctggagttcagtcaagcctctcttcatggggaagatcctctacgct
ccagactccccagccatcagactgatactaaagagtgccaacactacgtttgaggagctg
gagcgtctgatgaccatgggaaaggcctgggaggaggtgggacctcaaatctggaggttc
ttcaacgctggcatacagataaacatgatcagggacaccatcagaaaccccacggtagca
gacctaatagacaggagtatggaggacactgagttctcctctaaagacatcctcaacttc
ctgtacaacgggttggaggaggacagagaagagaccatgcccagcttcgactggaggaac
gtcttcaacctcacagaccaggccgtccgcatgttcaaccagtacggagagtgtatcagt
ttggataagttcaggccccatacagacgaggatcagctgacccaccaggctctctttcta
ttggaggagaataagttctgggcagggctagtcttcctggatgtctacccctggaccact
accgtgccgcgtcacgtcaggtacaagatacgcatggacatcgaccaagtggagagaacc
aacaagatcaaagacaggtattgggaccctggtcccagagcagaccctatggaggatctg
aggtatgtctggggtggctttgcctatctacaggacatggtagagcatggcatactgaag
atacagacgggacacgactggcccctgggagtctacgtacaacagatgccatacccctgc
tatgtagacgacctcttcatgttgactctgaaccggtgcttccctatcttcatggtgcta
gcgtggatctactctgtgtctatgacggtgaagagcatcgttctggagaaggagctacgc
ctcaaagagacactcaaggccatgggagtgaccaacggagtgatctggtacacctggttt
atagacagcttcatcatgatgaccgccagcacagccctgctcacactgattattatggct
ggtaaggtgttgaactactccaacccgttggttgtgttcctgttcctcctgacgttcacc
atggccaccatcatgcagtgtttccttctcagtgtgttcttcaacaaggccaacctggct
gcagcgtgcagtggtatcatctacttcaccctctacctgccccacatcctctgtgtggcc
tggcaggaccgcatcaccaagaacgccaagatcacagcgagtctgctgtccccagtagcg
tttggttttgggacggagtacctgtctcgttatgaggagcagggcctgggtctgcagtgg
gacaacatcggcaccagtccactagagggcgatgcctactccttcttcacctccataggc
atgatgatgtttgacgccgtgctctatggcttcctggcatggtaccttgacaacgtcttc
ccaggtcagtatgggattggacgaccattctacttcccattccagccctcctattggcaa
aggtctgaacccaccctctccaacattccagactcagatccagagaagcccgacgtggac
aaggacgtagacagtatgtgttcgcctaggaggtgtaatggcgtgggggtaaagaaaccc
tgcaaacaccaggacaagagagagaggatggagagagagagggaggagctgctgaaacga
caggaagaagaacagaacaaggaggagcaggaagaggacctgacaggtcagttgttcttt
gagccggagccagcagggctgaccgtgggggtagagattcaggacttggtcaaggtgttt
cctgggggatcccgtccagccgtggatcacctcagcatcgccttctacgagggccagatc
acatcgttcctaggacacaacggagccgggaaaaccaccactatgtctatcctgactggt
ctgttccctcctacatctgggacagcctttatcaacgggagagacatcaggactgacatg
gacagtatccgcacctccatgggcatgtgcccccagtacaatatcctcttcaaacatctg
acggtggaggaacacatcctgttctactccatgctgaagggcacctctcaggctgaggct
caacaggcggtcaatgtcatgctggaggacctgggcctgcctcataagagagacgaggag
gcacagaacctctcagggggtatgcagaggaagctgtctgttgccatggcatttgttggg
gggtcaaagattgtgatcctggatgagcccacgtcgggggtcgacccttactccagacgg
tccatctgggacctgctactcaaatatcgcacaggccgtacagtgatcctgtccactcac
cacatggacgaggctgacctgttgagtgaccgtgtggccatcatctctaagggccagctc
cattgctgtggctcccccctcttcctcaagaactgcttcggggtgggattctacctcacc
ctggtccgacgcatgaaggacgtgaggaaaaaagagaatgagtgtgactgtgcctcagag
tgttcctgtacctgttccacctgcaccaaggtgaaagaggaatcccagggccagtcccag
cagctggagagagctctggatggtgacgtggacaacatcaccacgctgatccatcaccac
gtcccagaagccaagctgatcgaggccatcggccaggagctgaccttccttctgcccaac
aagggtttcaagcaccgggcctacgcctctctcttcagagaactagaggaaacactggga
gacatgggcctcagcagcttcggcatctctgacacctcactggaggagatctttctgaag
gtgacagcagatggggaagaggcagcagccaatgccaaaactccagaacagtggatgttg
ctgaagagaaccaaaagctgcagtaaagttggtgtggaggagggtgaacctgaagaggct
aacggtctgaagcaggccaacggtgggggtaaccatgacgacgacagcgctgggaaaggg
tcgagtcaggtcaaaggagccaatctggtcatgcagcagtttctggccctgctggtcaag
aggtttcaccatgctaccagatcatacaaagacttcctcgcacagatcgtcctgcctgct
agcttcgtcctgatagccctgatcttcaccatgatcgtgcctccgttcggagagtacccc
cccctcatcctcactccctggatgtatggaaagcagctaactttcttcagtaacgagcga
ctggaaaacctccagatgagacatttcaccaaggtgttgctgaacccccctggccttggc
actcgctgtatggcaggaagccctctacaaaacctgccctgtgagaacgagacattggcc
tgggagacacctgcggtttcttcaatagccaataacatcctgcagagccctgagtggcac
cagctaaacccctccccttcctgccagtgcagctccaataagaagctgactatgttaccc
atctgtccaatcggagctggggggctgccccctatgcagaggaaagaggctacgggagat
atactactggacctgactgatagaaacattacagactacctggttaaaacctaccccagc
ctcatcagacaaagtttgaagagcaaatattgggtgaatgaacaaaggtatggaggcctg
tctgttggaggtcagctgcccatactggaagtcagccctaaacagatccaggataccctc
tctcaactgatgaagatgctcaacgtcactgggggtccctacacaaaacaatcgctgcag
gagatcggacctttcctcagatacatggaaagtgaatacaatgtcaaagtctggtacaac
aacaaaggctggcacgccatggtggccttcatgaatgtggccaacaacgccattctgagg
gcccacctgcctcgggacgttgaccccatgcagtacggcatcacagccatcaaccacccc
ctcaacctcaccaaggaacagctgtctgaagtcactgtgttgaagacatcagtagacgcc
gtgacagctatctgtgtgatctttgccatgtccttcatcccagcctcgtttgtcctctac
ctgatccaggagagagtgaccaaggccaaacacctccagttcgtcagcggggtcagtccc
cttgtctactggttagccaacttcttctgggatatgatgaactactctctcagtacagcc
atggtggtggggatctttgtagctttcgacaagaagtgttacacctcacccaccaacctg
ccagccctcgttctcctgctcttgctgtatgggtggtcaataacccccatgatgtacccc
atgtcatacatctttaacatccccagtacagcctacgtctctctgtcctgcatcaacctg
ttcatcggcatcaacagcagcgccctcaccttcatattggaactgtttgagaacaaccgg
gccttgttagagttcaatgagtggctgaagaaaggcctcctggtcttccctcacttctgt
ctgggccgggggctgattgacatggctatgaaccaggcggtgactgatgtctatgcacac
tttggtgaggaccgtgccatggatccgttcaaatgggactttgtagggaagaacctggtc
ttcatggctatagagggatgtgtctatttcctcttcactatcctcatagagtaccgcttc
ttcctcgaccactggttatcagacttccgagggccccctcctaaagatgaggacgaggac
gtggcggcggagagagagaggatctataacggcgggaacaagagtgacatcctccagatc
agagacctctgcaagacatactctgggaagacgagacaagcggtggacaggatctgtgtg
ggcgtgcctgcaggagagtgtttcggtctgttaggagtgaacggagccgggaaaacgacc
acctttaagatgttgactggggacacagacgttagttctggagaggccactgtctctgga
tacagtgtcctgtcggacatgttggacgtgcaccagaacatgggctactgccctcagttt
gacgctatagacgacctgctaacaggcagggaacatctttacctctacgctcgtctccga
ggggtccccgagtcagacatcagcagagtggcagattggggcatacagaagctgggtcta
tcagagtacgctggtcgctgtgcaggaacatacagcggaggcaacaagaggaaactctcc
acagccatcgctatgattggctgcccagccctggttctactggatgaacccactacaggt
atggacccccactcccgacggttcctgtggactgccattatgagtgtcatccaggacggg
agggccgtggttttgacatcacacagcatggaggagtgtgaagctctgtgcactcggttg
gccatcatggtcaacggcaccttcaaatgtctggggaccatacagcacctaaaatacaag
tttggcgatggctacgtggtgaccatgaaggtaaaggcagctaaagcaggcgtatctcca
gaactgggtccagcagagagcttcatggagagcagcttcccagggtgtgtccagagagag
aaacactacaacactctgcagtatgagatcgcctcctcctccctcgctaggatcttccag
ctggtggtcgccaacaaggacaaactcaatatagaggattactctgtatcacagactaca
ctagatcaggtgtttgtgaactttgctaagcagcaggcaggagaggacgaggacgtttta
caaccacgagcggtcaacgcgcgcaatgaaaaacaaaatgtccccacgaaacgcaaggtc
tcccccatcaagataaaaaccagaagaccaaaataa
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integrated database retrieval system
