Oncorhynchus keta (chum salmon): 118378799
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Entry
118378799 CDS
T09424
Name
(RefSeq) leucine-rich repeat protein soc-2 homolog isoform X1
KO
K08127
epiphycan
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oke00535
]
118378799
Proteoglycans [BR:
oke00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
118378799
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRRNT
LRR_5
LRR_9
Motif
Other DBs
NCBI-GeneID:
118378799
NCBI-ProteinID:
XP_035621677
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Position
33:complement(24411252..24441757)
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AA seq
621 aa
AA seq
DB search
MIKTKMATTSYNSALQALRKEVSGEFGGLIFHLFGLSAPWWTMRMLEGLILGLFVLNAVV
ANPRFARQVELDTYDSANYDVDLENLNLENPDVDGYEDGLTIVEPQIEIGTLAPPNYNYP
GPGGPASLEEEEEEEELPLRPQLIPQGSGGSGVLMGPDAQGEEELRLSPIDILHISGDFG
GSTGSGGSGGSGVSGGSGGSGDLLASGSGDLLASGGSGGSMEIGSAASGDLGSGGSGDLG
SGGSVGSGDLGSGDSVGSGDLGFGGSGGSGDLGSGGSGGSGDLGSLGSGGSGTLLGSGGS
GDILVSSTGGSGGSGGSGDSGIIIISGEEEMPLIPDITPQEASGVSGKSGAFGTSGASGP
GDSNSGGSEVTLIPDPEEEEEVLQTTPKTPQESGGTVGSGGSGLPEVDLDIKGMPTCLLC
TCLGGSVYCDDVKLTSVPPLPKETTHFYARYNHITKINKGDFAQMNKLKRIDLTANEIAS
IADDAFSGLPVLEELVLRENGVSQLPALPPVMTLIDASHNNIGATGIHKEAFKDMTGLLY
LYLTDNHIDHIPVPLPDNLRSLHLQRNNIQMIHEDTFCNLKDFNYIRNALEDIRLDGNPI
NLSRTPQAYVCLPRIPIGAHI
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaccaagatggccaccacctcttacaacagtgcgctccaggctttaaggaag
gaggtttcaggggaatttggaggactcatatttcatctatttgggctgtctgcaccttgg
tggactatgaggatgttggaggggctcatattgggactctttgtcctcaacgcagtggtg
gccaaccccagatttgcccggcaggtggaattagacacgtacgacagcgccaactatgat
gtggatctagaaaacttgaatttggagaatccggatgtcgatggttatgaagatggactg
actattgtcgaacctcagatagagattggcacactggccccaccaaattataactaccct
ggccctgggggccctgcatcactggaggaggaagaggaggaggaggagttgcccctaaga
ccccagctcatcccccaaggctcaggggggtctggggtactcatgggcccagatgcacag
ggagaggaggagctgcgcctgagtcctattgacattcttcatatctccggggactttggg
ggttccacgggttctgggggttccggtggctctggggtttccggaggttctgggggttcc
ggagaccttttggcttccggttctggggaccttttggcttctggaggctcagggggttcc
atggaaattggttcagcagcttctggggatcttggttctgggggttccggggaccttgga
tccggaggctctgtgggttccggggaccttggatccggagactctgtggggtccggggac
cttggttttggaggctctgggggttctggggatcttggttctggaggctctgggggttcc
ggggatcttggttccctgggctctggaggttccggcaccctccttggctcagggggttcc
ggggacatattggtttccagtactgggggttccggaggttctggaggttccggggactca
ggaataataattatatctggagaggaggagatgcccctcattcctgacattaccccccag
gaggcatcgggtgtttctgggaagtccggggcctttggcacctcaggggcctcagggcct
ggggactccaactctggtgggtcagaggttacattaatccctgaccctgaagaagaggag
gaagtgctccagactactccgaaaacccctcaggagtctggaggtacagtaggctcaggg
ggctctgggttgccagaggttgacttggacattaaaggtatgcctacctgcctgctgtgc
acctgtctgggtggttctgtctactgtgatgatgtgaagctgacgagcgtgccgcctctc
cccaaagagaccactcacttctacgcccgctacaaccacatcaccaagatcaacaagggc
gactttgctcagatgaacaagctgaagaggatcgacttgaccgccaacgagattgcatcc
atcgccgatgatgcgttctccggcctgcccgtgctggaggagctggtgctccgtgagaac
ggcgtgtcacagctgcctgcccttccgcccgtgatgaccctcatcgacgccagccacaac
aacattggcgccacaggcatccacaaagaggctttcaaggacatgactggtctgctgtac
ctgtacctaacagacaaccacatcgaccacatccctgtgcccctaccggacaacctgcgc
tctctgcacctacagcgcaataacattcagatgatacacgaggacacgttctgcaacctg
aaagacttcaactacatcaggaacgcactggaggacattcgcctggacggcaaccccatc
aacctcagcaggaccccacaggcctatgtgtgcctgccccgcatccccatcggagcccac
atctaa
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