Oncorhynchus keta (chum salmon): 118378815
Help
Entry
118378815 CDS
T09424
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118378815 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118378815 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118378815 (col2a1b)
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118378815 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
118378815
NCBI-ProteinID:
XP_052382357
LinkDB
All DBs
Position
10:8129987..8240083
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATHVVLLAVVKCQDEDQDVGSCMQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGDPGAKGQKGEPGDITDVVG
PRGPGGPLGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
SLGPRGPPGPSGKPGDDGEAGKPGKGGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLSGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDTGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGADGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGTAGSPGEKG
DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSTGIKGDRGNTGPAGAPGSPGANGSPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQSGDQGASGPAGPSGSRGPPGPIGPHGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHIWFGETMNGGFHFSYGDESLTANTASIQMTF
LRLLSTEANQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHKGTWGKTVIEYRSQKTSRLPIVDIAPVDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctttgtggattcgaggactgtactgctacttgtagcaacccatgtcgttcta
ttagctgtcgtcaaatgtcaggacgaagaccaggacgtaggcagctgtatgcaggacgga
cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagcccccccaagt
ggggaccccggagctaagggtcagaaaggggaaccaggagatatcacagatgtcgtagga
ccaagaggacctggaggccctttgggccccccaggagagcagggaccacgtggagacaga
ggagacaaaggcgataagggcagccctgggccccgtggcagagatggtgagcctggtacc
cccggtaaccctggcccccccggacctccaggacctaacggaccccctggccttggagga
aactttgctgctcagatggcgggaggattcgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatggggcctatgggtcctcgaggaccacctggaccttctggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc
tcgttgggtccccgtggtccacccggaccctctggtaaacctggagatgatggtgaggct
ggcaaacccggcaaaggtggtgaacgtggaccttctggtcctcagggagctcgtggattc
ccaggaactcccggtctgcctggaatcaagggccacagaggttatccaggtctggatgga
ctcaagggagagggtggagctgctggttctaagggtgagtctggtgctcccggtgagaat
ggcgctccaggaccaatgggaccacgcggtctgcctggtgagagaggtcgtcccggaccc
tctggttctgctggcgctcgtggtaatgacggtctgtctggccctgctggtcctcctggc
ccagtcggtccttctggtgctccaggcttccccggctctccaggttcaaagggagaagct
ggccccaccggtgctcgtggacctgagggcgctcagggaccccgtggagagtcaggaacc
cctggatctcccggacccgccggcgcatctggtaaccctggtactgatggtattggagga
tctaaaggatcagctggtgctcctggtatcgctggcgcgcctggcttccccgggccccgt
ggccctccaggaccccagggggccactggaccgctcggaccaaagggaacatctggtgac
cccggtatcccaggtttcaagggtgaggctggacccaagggagagcttggaccagctggt
ccacaaggagcactaggccctgcaggagaggaggggaagaggggacccagaggagagccc
ggcgctgctggacctcttggacctcccggagaaagaggcgcccccggtaaccgtggtttc
ccaggtcaggacggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc
gtgtccggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct
ggcgcaagaggtcttactggtcgtcctggagatactggtcctcaaggcaaagttggacct
ggtggtgctgctggtgaggatggtcgccccgggccccctggccctatgggagctcgcggt
cagcctggcgtgatgggattccccggacccaagggagctaacggtgagcctgggaaggga
ggagaaaaggggcttcttggtgccccaggtctgaggggtcttcctggaaaggatggtgag
actggagctgctggaccacctggccctgcaggccctgctggagaaagaggagagcaagga
cagcctggaccttctggcttccagggtctgcccggacctcccggcccacctggtgagggg
ggcaagcccggtgacatgggtgttccaggagagggtggagctgctggtgccactggaccc
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
cctcgtggtctgcctggaactcctggaactgacggacccaagggagcgatcggaccaggt
ggcgcatcgggtgcccagggaccccccggtctgcagggtatgcccggagagagaggggcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt
gcttctggcaaagacggctcaagaggtttgactggtcccattggtcctcccggcccagct
ggtcccaacggagagaagggtgaatctggtccatctggaccttccggtgctgatggtgcc
cgtggtgctcctggagacaggggtgagaccggacctcctgggcctgctggcttcgctggg
cctcccggatctgatggtcagcccggagccaaaggagagcagggagagggtggtcagaag
ggagacgctggtgcccctggaccccagggaccctccggagcacctggaccttccggacca
actggtgtttctggacctaaaggtgctcgcggtgctcagggaccccctggtgccactggt
ttccctggcgctgccggcagagtcgggccccctggtcccaacggtaaccctggtgctgct
gggccctctggccctgctggtaaagatggccctaagggtgtgcgtggagacggtggaccc
ccaggcagacagggagacgctgggctgcgtggaaccgctggatcccctggagagaaggga
gatgctggagaggatggcccctctggtcccgatggtccttcaggtccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg
ccaggaccctctggagagcctggtaaacaaggagctcctggtggaagcggagaccgtggg
ccccctggcccagtgggaccccctggactgactggacccgctggagagcccgggagagag
ggcaacgctggttctgatggaccacctggtagagatggatccactggaatcaagggtgac
cgtggtaacaccggtcctgctggtgctcctggctccccgggagctaatggttcccccggc
cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggacccgct
ggacctgccgggcctgctggagccagaggaatggctggacctcaaggaccccgtggagac
aagggtgaggccggagaaggtggagagagaggacagaaaggacacagaggattcactggt
ctgcagggtctgcccggacctccaggtcaatctggagaccagggtgcctctggacctgcc
ggaccaagtggatcaaggggacctcccggacctattggtccacatggaaaggatggttcc
aacggtatgcccggccccatcggaccccccggaccccgtggtcgctctggagagactggt
ccctctggtccacctggaaactccggtccccctggtcctcctggtcctcccggccctggt
atcgacatgtctgccttcgctggtctgtctcagcctgagaaatcccccgatcctctgagg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc
acgctcaagtctctcaacaaccagattgagaacatccgctcccccgagggctccaagaag
aaccctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagtggagag
tactggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaacatg
gagaccggagagtcctgtgtctaccccaagcccgccagcatccccaagaagaactggtgg
tccagcaagagcaaggctgccaaacacatctggttcggagagaccatgaacggaggattc
cacttcagctatggcgatgagagtctgacagccaacacggccagcatccagatgaccttc
ctgcggctcctgtccaccgaggcaaatcagaacctcacctaccactgcaagaacagcgtg
gcctatatggacggggccacagggaacctgaagaaggccgtgctgctccagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacctacagcgttatggaggacggc
tgcacgaaacataaaggaacgtggggaaagacagtgattgagtacagatcccagaagacc
agccggctgcccatcgtggacatcgctcctgtggatattggaggagcggaccaagagttt
ggtgttgacgtcggcgcagtttgcttcttgtaa
DBGET
integrated database retrieval system
