Oncorhynchus keta (chum salmon): 118378967
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Entry
118378967 CDS
T09424
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118378967 (ddx1)
03016 Transfer RNA biogenesis [BR:
oke03016
]
118378967 (ddx1)
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118378967 (ddx1)
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118378967 (ddx1)
Transfer RNA biogenesis [BR:
oke03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118378967 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
118378967
NCBI-ProteinID:
XP_052380574
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All DBs
Position
8:complement(48829266..48889811)
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AA seq
603 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRTAVKTGGAVFNKWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKAITKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTMGCYLDLDNGLLSFSKNGTDLGLAFEIPALLKNQPFFASCVLKNAELKF
NFGGEEFKNPPKTGFVAVDQASEGHVVKSSQTGSVKVSEVKAASCGPKALIVEPSKELAE
QTLNNVNQCKRYVDNPKLRDLLIIGGVPARDQLAVLEQGVDIVVGTPGRLDDLISTGKLT
LSQVRFLVLDECDGLLTAGYTDFIMRIYNQIPQVTPDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKHDRSWERLDRKNHILTDEVHAKDNTRPGA
NSSEMWSEAIKILKGEYTIRAIREHNMDQAIIFCRTKIDCDNMEQYFIVQGGGELEYYYY
NMEQYFIVQGGGELEYYYYNMEQYFIVQGGGELEYYINTTTTWTRPSSSVGPRSTVTTWS
STS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggcgttatgcctgagatcgcccaagcagtcgaggagatg
gactggctcctccccacagacatccaggcagagtccattccgttgatcctggggggagga
gatgtcctcatggcggcagagactgggagcggtaagactggggccttcagtatcccagtg
atccagatagtgtatgagactctgaaggaccaacaggaggggaagaaggggagaactgct
gtgaagactggtggagcagtgttcaacaaatggcagatgaacccgtatgacagaagcaca
gcgttcgccattggaccagacggactgtgttgtcaaagcagggagtttaaagaatggcat
ggctgtcgctctaccaaagccatcaccaaggggaagtactactatgaggtatcatgtcat
gaccagggcctgtgtaggatcggctggtctaccagccaggcagctttggacttaggtacc
gataagtatggctttggcttcggaggaacggggaagaaatctcacaacaaacagtttgac
agttatggagaggagttcaccatgcatgacaccatgggatgttatctggatctagacaac
ggactcctctccttctccaaaaacggtactgacctgggcttggcgtttgagatcccagct
cttctgaagaaccagcccttctttgcttcctgtgttctcaagaatgcagagctgaagttt
aactttgggggggaggagtttaagaatcctcccaagacgggcttcgtagcggtggaccaa
gcttctgagggacatgtggtcaaatccagccagacaggcagtgttaaggtgtcggaggtg
aaggctgcttcctgtggtcccaaagctctgatcgttgagccttctaaagagcttgctgaa
cagaccctcaacaacgttaaccagtgtaagagatatgtggacaatcccaagctcagagat
cttctgatcatcggaggtgttcctgctagagaccagctggctgtactggaacaaggggtg
gacatcgtggttggaacaccaggtcgtctcgatgacctcatctctacgggaaaactcacc
ttgtctcaagtccgcttcctggtcctagatgagtgtgatggtctccttactgccggctac
accgactttatcatgagaatctacaaccagattcctcaagtcaccccggacggcaagaga
cttcaggtcatcgtctgctcagcgacgctccactccttcgacgtaaagaagttgtcggag
aggatcatgcacttccccacctgggtggacctgaagggagaggattctgtccctgagacc
gtacatcacgtggtcgtacctgttaaccctaaacacgaccgcagctgggaacgcctcgac
cgcaagaaccacatcctgactgatgaggtccatgctaaagacaacaccagaccaggagcc
aacagctcagagatgtggtctgaggccatcaagatcctgaagggggagtacaccatcaga
gccatcagggaacacaacatggaccaggccatcatcttctgtcggaccaagatcgactgt
gacaacatggagcagtacttcatagtacagggaggaggtgagttagaatactactactat
aacatggagcagtacttcatagtacagggaggaggtgagttagaatactactactataac
atggagcagtacttcatagtacagggaggaggtgagttagaatactacataaatactact
acaacatggaccaggccatcatcttctgtcggaccaagatcgactgtgacaacatggagc
agtacttcatag
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