Oncorhynchus keta (chum salmon): 118379198
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Entry
118379198 CDS
T09424
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118379198 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118379198 (parn)
Enzymes [BR:
oke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118379198 (parn)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118379198 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
118379198
NCBI-ProteinID:
XP_052359167
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MEVTRTNFKDSLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYMKLKKH
SMDFLLFQFGLCAFTYDQAESKYVIKTFNFYIFPKPFNRTSPDTKFICQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEEVQLREQYEERRSQSNGSGNPSYISPNPNKGPGSVPEEHREY
IGRVVEKVESLFTTSEKTVDLEPCTGFQRKLIYQTLNSKFPKGLHVETLETEKKERYIQI
SKVDDEERKRRERQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CLLPEDLNDFKEVTQCVFPRLLDTKLMATTQPFKELINITSLAELQKQLKESPFKSPKVV
TAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANYLGTFLTPPRAHIPSQSKLIQPFVNK
LFLMRIIDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYVQGRQQVRESQGHSTQSWDEDGWVKPHYT
SPSTVGAGPTGYSYGHNRPSLGKRCVSPIQEEQPTEGEAQRHADGWSGYTHSHTHSDTGS
KKIRTDGVCVRTYAGVVDSRTSEGWLKTQSESDSSSMSPIQEEAGSEAVDDASDPAAGEW
QQQPSTNQSKKSRKNNRMRKSDGENTRMRKSDGENNRMRKSDCENNRMRKCDGENNRMRK
SDGENTRMRKSDGAETTSSLFDVPQVW
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaacaaatttcaaagacagtttaagcactgtgtacagcgcaatagag
gaagcagactttctcgcaatcgatggggaattttcaggtattagcgatgggcccaacgtc
agcgcactgactaacgggttggacacgccagaggagcgctacatgaagctaaaaaagcat
tccatggacttcttgctgtttcagtttggactgtgtgcgttcacatatgaccaggcagag
tccaagtacgtcatcaagacttttaatttttatatattcccaaagccgttcaacagaacc
tccccagacaccaagttcatctgccagagttccagcatagacttcctggccagtcagggt
tttgacttcaacaaggtgttccgtaacggaatcccgtacctgaaccaggaagaggaagtg
cagctgcgggagcagtatgaggagaggcggagtcagagtaacggatcaggaaacccctcc
tacatctcccccaacccaaacaaaggccccggcagcgtccccgaggagcacagggagtac
atcggacgggtggtagagaaggtggaatctctgttcactacctcagagaagactgtggac
ctggagccctgcactgggtttcagaggaagctgatctaccagactctcaactccaagttc
ccaaagggccttcatgtggagaccttggagacagagaagaaagagcgatacatccagatc
agcaaggtggacgacgaggagaggaagaggagggaacggcagaaacaggagagagaacag
gaggagctgaatgacgctgtgggattctccagggtcatacacgccatctccaaatctgga
aagttggtggttggccacaacatgctgctggacgtcatgcacaccatccatcagttctac
tgcctactgccagaggacctgaatgactttaaagaagtcactcagtgtgtcttccccagg
ctgttggacaccaagctcatggccactacgcaacctttcaaggagttgatcaacatcacg
tctctagcagagctgcagaaacagctgaaagagagccccttcaaatctcctaaagttgtg
acggcggaggggttccccagctacgatacagcccaggaacagctccacgaggcgggctac
gatgccttcatcactggtctctgcttcatctccatggccaactacctaggtactttcctg
actccccccagagcccacatcccatcccaatcgaaactcatccaacccttcgtcaacaaa
ctgttcctgatgaggatcatagatattccctacctcaacatcagcggaccagacctccag
cccaagagggatcatgttctgtacgtcaccttccctaaggagtggaagaccagtgacctc
taccagctgttcagtgcctttggtaacatccaggtgtcgtggattgatgacacgtcagcg
tttgtatctctgagtcagacggaccaggttcagatcgcgatgaacaccagtcgctatgcg
gagagctaccgtatccagacgtatgcagagtatgtccagggcaggcagcaggtcagggag
agccagggccattctacccagtcctgggacgaggacggctgggttaaaccgcactacacc
tccccctctacagttggtgctggtcctactggctacagctacggtcacaacaggccgtcg
ttggggaaacgctgtgtcagtccgatccaggaggagcagcctacagagggagaggctcag
agacacgctgacggatggagtggctacacacactctcacacacactccgacacgggcagc
aagaagatcaggaccgacggggtgtgtgtacggacgtatgcaggagtagtggacagtagg
acgtcagaaggctggctgaaaactcagtctgagtctgattcgtcgagcatgagtccgatc
caggaagaggcggggtcggaggcggtagacgacgctagtgatccggcggcgggcgaatgg
caacagcagccttcaaccaatcagagcaagaagagccgcaagaacaacaggatgaggaag
agtgatggtgagaacaccaggatgaggaagagtgatggtgagaacaacaggatgaggaag
agtgattgtgagaacaacaggatgaggaagtgtgatggtgagaacaacaggatgaggaag
agtgatggtgagaacaccaggatgaggaagagtgatggtgcagagacgacgtcttctctg
ttcgacgtacctcaggtctggtag
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integrated database retrieval system
