Oncorhynchus keta (chum salmon): 118379367
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Entry
118379367 CDS
T09424
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118379367
Spliceosome [BR:
oke03041
]
Common components
Common spliceosomal components
General mRNP proteins
118379367
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RBD_DEAH11
RRM_7
RRM_8
CDC45
Motif
Other DBs
NCBI-GeneID:
118379367
NCBI-ProteinID:
XP_035622288
LinkDB
All DBs
Position
27:complement(21563940..21575705)
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AA seq
535 aa
AA seq
DB search
MADDFDIEAMLEAPYRKDEIKSSSANGHEERSSKKKKRSHSRSSRSPSSDKRRSKSKDRK
KSRDRKRSKSREKKRSRSKERRRSGSHSRERAGRYRGRRSPFLGPKFNGGPGGKIGPPHA
NKLSRRRSRSRSPFKKDKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEDFFSAVG
KVRDVRMISDRNSRRSKGIAYIEFLEANSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAA
MANNLQKGNAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETARSKGYGFIS
FADAECAKKALEQLNGFELAGRPMKVGNVTERTDSSTASSFLDNDELERTGIDLGTTGRL
QLMARLAEGTGLQIPPAAQQALQMSGSMHSSSIHFGNMAAGTAVANPAMNLGPSMNQAMN
LPTQPLATHCLQLSNMFSPQSENEPGWDIEIQDDVMEECNKHGGIVHIYVDKNSPQGNVY
VKCPTIPTAMAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSVTATQLLMPSRR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgattttgacattgaggctatgctagaggctccatacagaaaggatgagatc
aagtcctctagcgctaatggacatgaggagcgcagtagtaagaagaaaaagaggagccac
agtaggagtagtcggagcccgagctctgacaagcgcagaagcaagagcaaagacaggaag
aagagccgggacaggaagaggagcaagagtcgggagaagaaacgcagccgcagcaaggag
cgccgccgcagcggctcccacagcagggagcgtgccgggcgctacagaggacgccgcagc
ccctttttggggccgaaatttaacggtggtccaggagggaagattggcccaccacatgcc
aacaaactaagtcgtaggcgctcaagaagtcgtagtcccttcaagaaagacaagagtcca
gtaaggcaaccaattgacaacctgaccccagaggagagggatgcccgtactgtgttctgt
atgcagctggcagccagaatccgaccacgagatctagaggacttcttctctgctgtgggg
aaagtgagagacgtgaggatgatctccgatagaaactccaggaggtcaaagggcatcgcc
tacatagagtttctggaggcgaattcggtcccattggccattggcttgactggacagaga
cttcttggagtgcccatcattgtccaggcctctcaggctgagaagaacagagcagcagca
atggccaacaaccttcagaagggtaatgctggccccatgcggctgtacgtgggctctctg
cacttcaacatcacagaggacatgctgcgaggcatctttgagcctttcggaaggattgag
agcatacagctgatgatggacagtgaaactgcacgatccaaaggatatggtttcatctca
tttgcagatgcagagtgcgctaagaaagcattggagcagctgaatggctttgagctggcc
ggacggcccatgaaggttggtaacgtgacagaacgcaccgactcctccaccgccagctcc
ttcctggacaacgacgagctggagaggacaggcattgacctgggcaccaccgggcgcctg
cagctcatggcccggctggcagagggtactggtcttcagattcctccagctgcacaacag
gctctacagatgagtggttccatgcactcctcttcaatccactttggcaacatggcagct
ggtacagctgtcgccaaccctgccatgaacctgggtccaagcatgaaccaggccatgaac
ctcccaactcaaccactggctacacactgcctacagctgtccaacatgttcagcccacag
tcggaaaatgagcctggttgggacatcgagattcaagatgacgtcatggaggagtgcaac
aaacatggtggcattgtccatatatatgtcgacaagaactcacctcagggcaacgtgtac
gtaaaatgccccactatcccaacagcgatggctgcagtgaatgccctacatggacggtgg
tttgcaggtaaaatgatcactgcggcgtacgtacccctcccaacctaccataaccttttc
cctgattcagtaacggccacccagctactgatgccttcgcggcgataa
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