Oncorhynchus keta (chum salmon): 118379377
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Entry
118379377 CDS
T09424
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03015
mRNA surveillance pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118379377 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
118379377 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118379377 (pabpc1l)
03041 Spliceosome [BR:
oke03041
]
118379377 (pabpc1l)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118379377 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
118379377 (pabpc1l)
Spliceosome [BR:
oke03041
]
Complex C
Other components
Complex C specific factors
118379377 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
118379377
NCBI-ProteinID:
XP_035622300
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All DBs
Position
27:21554420..21560559
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AA seq
651 aa
AA seq
DB search
MNSSGQSYPLASLYVGDLHPDVTEAMLYQKFSPAGPITSIRVCRDVITRRSLGYAYINFQ
QPADAECALDTMNYEVLKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIDTMNGMLLNDRKVLETGSDSGIADP
KAHFLGGKCQLSTISFVGHFKSHKERQAEFGAKAMKFTNVYIKNFGDDYSDEKLQEVFSA
FGRTLSVRVMMDERGRSRGFGFVNYENHEDAQRAVEEMNGKELVPGRVLYVGRAQKRMER
QGELKRKFELIKQERIHRYQGVNLYVKNLDDGLDDEKLRKEFAPYGTITSAKVMTDGGHS
KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERKAILTNKYMQRTMPGPVI
DSYQQAGYYMSAVPQPPSRTFYNPNPASTMRTSPRWAAQPPRPQAPYSGQFVRSAVPRRA
STPISTVRQASTQAPRIINYTQRMANIGTQTAGGRAGMSGGMVRGTQYKYSSGVRNLQQV
ITMPAPMAVQQVVTQQIMEPAVHVRGQEPLTASMLAAAPLMEQKQLLGERLYPLIHDFHS
NLAGKITGMLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKENSPKK
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggtcagtcatacccattggcctccctctacgtaggggatctgcatcct
gacgtcacagaggccatgctctaccagaagttctctcctgctgggcccatcacatccatc
cgtgtctgccgtgatgtcatcactcgcaggtccctaggatacgcatacatcaacttccag
caacccgctgatgcggaatgtgctctggatacaatgaactatgaggtcctcaagggtagg
cctatcagaataatgtggtctcagcgtgacccagggctacggaagtcaggagttggaaac
atttttatcaagaacatggacgagtccattgacaacaaggccctgtatgacacattctca
gcctttgggaatattctgtcttgcaaggtagtgtgtgatgagaatggctccaaaggctac
ggctttgttcactttgaaacccaagaggcagccaatcgtgccattgataccatgaatgga
atgctattgaatgaccggaaagtgctagagacaggtagtgactctggcattgcagaccca
aaggcccatttcctgggggggaaatgtcagttgtccacgattagttttgttggccacttt
aagtcccataaggagcgacaggctgagtttggggccaaagccatgaagttcaccaatgtg
tacatcaagaactttggcgacgactatagtgatgagaaactccaggaggtcttctcagca
tttggcaggaccctcagtgtgcgggtgatgatggacgaaaggggccggtctcgtggattt
ggctttgtaaactatgaaaaccatgaggatgcacaaagggcagttgaggagatgaatggg
aaagaactcgttcctggccgagttctgtatgtgggccgtgctcagaagaggatggagcga
cagggggagctgaaacgcaagtttgagctgatcaaacaggaacgtatccaccgctatcag
ggggtcaatttgtacgtcaagaacttggatgatgggttggatgacgagaaactcaggaag
gagtttgccccttatggcaccatcaccagtgccaaggtgatgacggacgggggccacagc
aagggctttggcttcgtctgtttctcgtctcccgaggaggccaccaaagcggtaactgag
atgaacggccgcattgtggccacaaagccgctgtacgtggctctggcccagcgcaaggag
gagcggaaagccatcctcaccaacaaatacatgcagaggaccatgcctggcccagtcatc
gactcctaccagcaggcaggctactacatgtctgctgtgcctcagcccccaagtcgcact
ttctacaacccgaaccctgcgagcaccatgaggacatctcctcgctgggctgcacagcca
cccagaccacaggcaccctactcgggccagtttgtcaggtctgctgttccccgacgcgcc
tccaccccaatcagcaccgtcagacaggcctccacccaggctccacgcatcataaactac
acacagaggatggctaacattggcacacagacagcaggaggtcgggcaggcatgtctggt
ggtatggttcgaggcacccagtataaatactcatcaggggtgaggaacttacagcaggtc
atcactatgcccgcaccaatggcagtgcagcaggttgttacccagcagattatggagcca
gcggtgcatgtcagaggccaggaacccctcactgcctccatgctggctgcagcccctctc
atggagcagaaacagctgcttggtgagcgattgtaccctctgatccatgactttcactcc
aacctggctggtaaaatcactgggatgctgctggagattgacaattctgagctgctgcac
atgctggagtcaccagagtccctgcattctaaggtggatgaggcggtagctgttctgcaa
gcccaccaggccaaggaaaactctcctaagaagtag
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