Oncorhynchus keta (chum salmon): 118379808
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Entry
118379808 CDS
T09424
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118379808
Transcription factors [BR:
oke03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118379808
BRITE hierarchy
SSDB
Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
118379808
NCBI-ProteinID:
XP_052349162
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Position
34:13704902..13725927
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AA seq
298 aa
AA seq
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MYSMMMETDLHSPGPQTNTNSGQSGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGMGLGVGVGSSGVGQRLESPVCHGGSASSGYTHMNGWANGAYSGQV
AAAAAAAAMMQEAQIVYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSQGY
MSASPSGYGGITYTQHQSSGVSSSAAMSTLGSLVKSEPSGVQYEDCHEGLSMNHHGNL
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccattcccctggaccccaaacgaacacaaat
tcggggcagtcgggaccgaacagcgggtccaaagcgaatcaggaccgagtgaagcgtccg
atgaacgcgttcatggtgtggtcccgtgggcagcggagaaagatggcccaagagaacccc
aaaatgcacaactccgagatcagcaagcggctgggcgcggagtggaaggtgatgacggaa
gcggagaagagacccttcatcgatgaagcgaagcggttacgagccatgcacatgaaggag
cacccggattacaagtacagaccaagacggaagaccaagaccctgctgaaaaaggacaaa
tactctctggccggtggcctgctctctggggctggcggtggtggaatgggtctgggggtc
ggggtgggttcatccggggttggccagaggttagagagccccgtgtgccacgggggctcc
gccagctcaggctacacgcacatgaacggctgggcgaacggtgcgtactcggggcaagtg
gctgcagcagctgcggccgcggcgatgatgcaggaggcgcagatagtttacagccagcac
ccgggcagcgggcaccaccaccactcacaccaccaccaccacccgcacaacccccagccc
atgcaccgctacgacatgtcggcgctccagtacagccccatctcgaactctcagggctac
atgagcgcctctccgtccggctacggcgggatcacctacacgcagcaccagagctctggc
gtctcctcctccgctgccatgagcacgttagggtcgctggtgaagtcagagccgagcggt
gtccagtatgaggactgtcatgagggactgtccatgaatcaccatggaaacctgtga
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