KEGG   Oncorhynchus keta (chum salmon): 118380159
Entry
118380159         CDS       T09424                                 
Name
(RefSeq) cullin-4B-like isoform X1
  KO
K10609  cullin 4
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03420  Nucleotide excision repair
oke04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    118380159
  09124 Replication and repair
   03420 Nucleotide excision repair
    118380159
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oke04121]
    118380159
   03400 DNA repair and recombination proteins [BR:oke03400]
    118380159
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oke04147]
    118380159
Ubiquitin system [BR:oke04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     118380159
DNA repair and recombination proteins [BR:oke03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      118380159
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      118380159
Exosome [BR:oke04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   118380159
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW PG_binding_4
Other DBs
NCBI-GeneID: 118380159
NCBI-ProteinID: XP_052367931
LinkDB
Position
4:61738210..61760665
AA seq 868 aa
MISRLAIAIRICIHFFMFPIGLPSPNPPPPTQEARPAASDVNNDSSITSSKKRKINSSER
EDIDSISSSPKTTNYSSSSCSSTSQHIQKKLRFEDSVDFIGLDVKMAEESSASCSSNKMK
TVFLAGGVGHHANGLTKTAGSTTFSNSKPGAAKKLVIKNFKEKPKLPENYTHETWQKLKE
AVEAIQNSISIKYNLEELYQAVENLCSHKISAKLYKQLQVVCEDHIKAQIDQFREDALDS
TLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSVWDMGLELFRFYIISDMKV
QSKTIDGILLLIERERSGETVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQ
RLMQEREVPDYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLN
HLLDENRIQDLCLLYQLFSRVRGGVLVLLQHWIEYIKAFGSTMVINPEKDKTMVQELLDF
KDKVDHIIHICFMKNEKFVNAMKEAFETFINKRTNKPAELIAKHVDWKLRAGNKEATDEE
LEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFT
SKLEGMFKDMELSKDIMVQFKQCQNLPGNIELTVNILTMGYWPTYVPMEVHLLPEMVRLQ
EIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTLE
EIKLATGIEDGELRRTLQSLACGKARVIHKVPKSKDVEDGDKFSCNDDFKHKLFRIKINQ
IQMKETVEEQASTTERVYQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPAD
LKKRIESLIDRDYMERDKENPNQYNYVA
NT seq 2607 nt   +upstreamnt  +downstreamnt
atgattagtagactggctatagctattagaatttgtattcattttttcatgtttccaata
ggtttaccttcccctaatcccccaccgccaacccaagaggctagaccagcagcttcagat
gtaaataacgacagcagtatcacgtcttcgaagaagaggaaaataaacagttctgagagg
gaagacattgattcaatctcttcatctcctaaaaccacaaattattcatcttcctcctgc
tcctccacttcgcaacacattcagaagaagttgaggttcgaagattcagtagatttcatt
ggactggatgtgaaaatggccgaggagtcgtctgcatcgtgttcttctaacaagatgaaa
acagtttttttggctgggggtgttgggcaccatgcaaacgggctgacgaaaacggcaggc
tccactaccttctccaacagcaaacctggcgctgcaaagaaactagtcatcaagaacttc
aaagaaaagcccaaattaccagagaactacacacacgagacctggcaaaagctaaaggag
gcggtcgaggccattcagaacagcatttcaatcaagtacaatcttgaggagctctaccag
gctgtggagaacctctgctcccataagatatcagccaagctctacaaacaactacaggtt
gtgtgtgaagaccacatcaaggcacaaatcgatcaattcagagaggatgcactggacagt
acactcttcctgaagaaaatagacaagtgttggcaagatcactgcagacaaatgatcatg
attagaagtatatttttgttcttggaccgcacctatgttttacaaaattcaatgctccca
tcagtctgggacatgggcctggagttgtttaggttttacattatcagcgacatgaaggtc
cagagcaagaccatcgacggaatcctgctgctcatcgagagggagcgcagcggcgagacc
gtcgaccgtagcctgctgcggagcctattgagcatgctttctgacctgcagatttatcag
gactcctttgaacagcgctttttggaggagactaatcgtctgtatgccgctgagggacag
aggctgatgcaggagagagaggtcccagattatctccatcacgtcaacaaacgcttagag
gaggaagcagacagagtcatcacgtatctagaccagagcacacaaaaacctctcattgcc
actgtggaaaagcaactactgggtgaacatctcactgcaacactgcagaaaggcttgaat
cacctgctagatgagaacagaatccaggacttgtgtcttctctatcagctcttcagtcgg
gtgagagggggcgtgctagtcctcctacaacactggatcgagtacatcaaggcctttgga
agtacgatggtcattaaccctgagaaggacaagaccatggtacaggagctgctggacttc
aaggacaaggtggaccacatcatccacatctgtttcatgaagaatgagaagtttgtcaat
gccatgaaggaagccttcgagaccttcatcaacaagaggacaaacaaacctgctgagctc
attgcaaaacacgtggattggaagctgagggcggggaacaaggaggccacggacgaggag
ctggagaagatgttggacaagatcatgatcatcttccgattcatttatggaaaagacgtt
tttgaggccttctacaagaaagatctggccaagaggttgctggtgggaaagagtgcctcc
gtggatgccgagaagtccatgctgtcgaaactgaaacatgaatgtggagcggcattcacc
agcaagctggaaggcatgttcaaggacatggagctttccaaggacatcatggtgcagttc
aaacagtgtcaaaacctccctggtaacattgagctgacagtgaacatcctcaccatggga
tactggcccacctacgtgccaatggaggtccatctgctcccagagatggtgcggctgcag
gagattttcaagacgttttacctcggcaagcacagtggcagaaagctacagtggcagtcg
acattaggccattgtgttttaaaagctgaatttaaagagggcaaaaaggagcttcaggta
tccctgtttcagacactagtgctgctcatgttcaatgaaggagaggaattcaccttagag
gagatcaagctagctacaggaatagaggatggcgagctgcggcggaccctgcagtcgttg
gcgtgtggcaaggcgcgcgtcatccataaagtccccaaaagcaaagacgtggaggacgga
gacaagttctcgtgtaacgatgacttcaaacacaaactcttcaggatcaagatcaatcag
atccagatgaaagaaacggtggaggagcaagccagcaccacggaacgagtctaccaggac
cggcagtatcagatcgatgccgccatcgtcaggatcatgaagatgaggaagactctgagc
cataacctcttggtgtcggaagtgtacaaccaactcaagttccctgtcaagcctgctgac
ctaaagaagagaatagagtctctcattgacagagattacatggagcgcgacaaggagaac
cccaaccaatacaactatgtggcttaa

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