Oncorhynchus keta (chum salmon): 118380413
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Entry
118380413 CDS
T09424
Symbol
tsen2
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2 isoform X1
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oke03016
]
118380413 (tsen2)
Enzymes [BR:
oke01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
118380413 (tsen2)
Transfer RNA biogenesis [BR:
oke03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
118380413 (tsen2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
118380413
NCBI-ProteinID:
XP_052357242
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MTDAVFQAPKRRPRVFEAYDAPFPVPLAAVGASLQQTLIYRADMVNQHVVVRDPEHIQAL
YGKGYFGKGILSRSRPDHSISHQWEKFGDRVLPVISLFKYQKHLSWAQDVLLAQGLEEEV
VNQILQRLCQPMEPGLREENGNDDCPASPHRSEETGSGAGNPQDMASEQAGTVGQQGQSS
ASWSPEDQGEQDSQCPQAKRPRSQVDGGFDPLSELYPQESQQIDPAALSTVRCPRHDDWL
VDCGCRLEDNVLETLTLQRDRQTEAGRQGADRGYEYVLVMEEENSVVKQGRAGPGMTARR
VCRVNPFRLLEYLQLTLEEAFFLVYALGCLSVYYNEEPLSVLQLWEMFRSVQPHFETSYM
AYHYFRSRGWVPKPGVKYGTDLMLYRKGPPFYHASYSVVVEKVDQPGRGGALRPFSWRSL
AALSRITGNVSKDLMLCYVIYPSHLTEEHLSSPDCLCMVTVQEIILSRWISSRERTETDD
I
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgcggtgttccaggcacccaaacggaggccaagagtttttgaggcgtacgat
gccccgtttcctgtccctcttgctgcggtgggtgcgagtctgcagcagaccctaatctac
agagcagatatggtcaaccagcatgtcgttgtcagggaccctgaacacatacaagctctc
tacggaaagggttactttggtaaaggcattttatcaagaagcagaccagaccacagtatc
tcacaccaatgggaaaagtttggtgacagagttctacccgtcatttccctgttcaagtac
cagaagcatttgagctgggcacaggacgtactcctagctcaaggattggaagaggaggtt
gtcaatcagatactgcagagactttgtcagccaatggagccagggctcagagaggaaaat
gggaatgatgactgcccagccagccctcacaggagtgaggaaaccgggtcaggggcaggt
aacccccaagacatggcctcagagcaggcagggacagtgggacagcagggccagtcatca
gcttcctggagcccagaggatcagggggagcaggacagtcagtgtccccaggctaagagg
cctaggagtcaagtagacggagggttcgacccactgtctgagctgtacccccaggagtca
cagcagatagacccagcggccctgtctacggtccggtgccccaggcatgatgactggctg
gttgactgtggctgtcgcctggaggacaacgtgctggagaccctcaccctgcagagagac
agacagacagaggcaggccgacagggggcagaccgtgggtatgagtatgtactggtgatg
gaagaggagaatagtgttgtcaagcagggcagagcagggccagggatgacagcgaggaga
gtgtgtagagtcaaccccttcagactgctagagtaccttcaactgactctggaggaggct
ttcttcttggtctatgcattaggatgcctttcagtttactacaatgaggagccattgtcg
gtgctccagctgtgggagatgttccggtcggttcagccccactttgagacgtcatacatg
gcctaccattacttccgcagcagggggtgggtgcccaagcctggggtgaagtacgggact
gacctcatgctttaccgaaaaggaccacctttctaccatgcaagttactctgtggtggtg
gaaaaggtagaccagccgggtaggggaggggctctccgtccgttcagctggaggtctctg
gctgctctcagcaggattaccggcaacgtttccaaggacttgatgctgtgctacgtcatc
tacccatctcacctgacagaggaacatctttcctctccagactgtctctgcatggtcaca
gttcaggagattattttaagcagatggatatcatcacgagagcggacagagacggacgac
atatga
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integrated database retrieval system
