Oncorhynchus keta (chum salmon): 118380466
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Entry
118380466 CDS
T09424
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118380466 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
118380466 (ddx39b)
03015 mRNA surveillance pathway
118380466 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118380466 (ddx39b)
03041 Spliceosome [BR:
oke03041
]
118380466 (ddx39b)
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118380466 (ddx39b)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118380466 (ddx39b)
Spliceosome [BR:
oke03041
]
Complex C
Other components
EJC/TREX
118380466 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118380466 (ddx39b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
118380466
NCBI-ProteinID:
XP_052328750
LinkDB
All DBs
Position
20:complement(37609849..37630486)
Genome browser
AA seq
489 aa
AA seq
DB search
MTEQDVENELLDYEEDDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRTLALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEILRLTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVLELIMMFNQV
LELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQV
LELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQV
LELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQVLELIMMFNQV
LCFMFHCGT
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggatgtggagaatgagctcttggactacgaggaggatgatgtggtggga
gatctatcaggaggggatattctgtccattaaaaaggagcgtgtgaagggctcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcctgagctgctgagggcgata
gtggactgtggctttgagcatccctctgaggttcaacatgaatgcatccctcaggctatc
ctgggtatggatgtgctgtgccaggctaagtccggtatgggcaagacggccgtgtttgtc
ctggccaccctacagcagctggagcctgtcactggacaagtgtccgtgctggtgatgtgt
cacacccgagagctggcgtttcagatcagcaaagagtacgagagattctccaaatacatg
ccgactatcaaggtggcagtgttcttcggtggcctgtccataaagaaggacgaagaggtg
ttgaagaaggagtgtccccatgtggtggtggggacgccggggcgaaccctggccctgatc
cgcaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttggaacaactcgacatgcgcagagacgtccaggagatactccgtctgaccccccat
gagaaacaggtcatgatgttcagcgccaccctgagcaaagagattcgccccgtctgccga
aagttcatgcaagatccgatggaaatctttgttgatgatgagaccaagctgactctccac
gggctgcagcagtactacgtcaaactgaaggacaacgagaagaacaggaagctctttgat
ctcctcgacgtgctggaattcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctggaattaattatgatgttcaaccaggtactggaattaattatgatgttcaaccaggta
ctgtgtttcatgttccactgtggtacataa
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