KEGG   Oncorhynchus keta (chum salmon): 118381128
Entry
118381128         CDS       T09424                                 
Name
(RefSeq) protein Atg16l2 isoform X1
  KO
K20868  autophagy-related protein 16-2
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:oke00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    118381128
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oke04131]
    118381128
   03029 Mitochondrial biogenesis [BR:oke03029]
    118381128
Membrane trafficking [BR:oke04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    118381128
 Others
  Specific organelles associated proteins
   Auto phagosome
    118381128
Mitochondrial biogenesis [BR:oke03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    118381128
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ATG16 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_EML Beta-prop_NWD2_C ANAPC4_WD40 Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_WDR75_1st Ge1_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Cytochrom_D1
Other DBs
NCBI-GeneID: 118381128
NCBI-ProteinID: XP_052331010
LinkDB
Position
1:7011167..7079993
AA seq 574 aa
MAALGAERGEASKVEEKINTQKTADSWKRHIIRQLKHRDKYQKAMFQDVILAYINLLERS
NQRALITKGILGSGSRYPASSNDSLTSLISKNDDLKKTTGELAYQVLELQQEIKIKDSVL
EEQHARMCEVRRDLLGVQAEDGSLAVRVAEVTEGNRLLKREYDSLLEQHHDMDQTFREEK
LRGQEMLEELVRRKQHAAIRMNSRNERRVRAREASLQKELETAGKVKVTIDVGSVSAPAS
REASPKSDLAERRTTRLFRSASVTSPPRILDSIKELFDRKKRRGNSLCLSLEEELYVPVG
ICLAARVPVRALHVLDAHELGINAVRFSSSCNLLATGGTDRCIKLWDVKAGMLHNRGTLD
GSNEGITSIEFDQTGTRVIAASYDKSALFWRLDDSAPKLTLTGHSRKVTAAKFKCSLRQV
VTGSADRTVKIWDLHRAACIQTIEVLSYCSDVVCSEHVIVSGHYDRKIRFWDSRAASCTQ
EVPLQGKVTSLDISTDHRQLLSCSRDESLQVVDLRMNSSRICFRAEGFKCGCDSTKAIFS
PDGSYLAAGSADGAVYIWNVNSGNLETRLPDMHR
NT seq 1725 nt   +upstreamnt  +downstreamnt
atggcggcgctaggagcggaacgtggcgaggcgtctaaagtcgaagaaaagataaacaca
cagaagacggccgactcatggaaacgtcatatcatccgccaactcaaacatcgggataag
tatcagaaggcgatgtttcaagatgtcatactggcatatattaatctgctggagaggtcc
aatcagagagccctcatcacgaaaggcatcctgggatctggttcaaggtaccctgcctcc
tccaacgactccttgacgtctctgatttccaagaatgatgatctgaagaaaacaactggg
gagctggcctaccaggtattggagctccagcaggagattaagatcaaagactccgtactg
gaagagcaacatgccaggatgtgtgaggtgcggagggatctgctgggggtgcaggctgag
gatggaagtctggcggtgcgtgttgccgaggtgacggaggggaaccggctgttgaaacgg
gagtacgactccctgctggagcagcaccatgatatggaccagaccttcagagaggagaag
ctcagaggtcaggaaatgctggaggagctggtccgcaggaagcagcacgcagccatcagg
atgaacagccgcaacgagagacgggtcagagccagagaggcaagtcttcagaaggaactg
gagaccgccgggaaggtgaaggtgaccattgacgtcgggtcggtcagtgccccggcctcc
agagaagcctcccctaagagtgatctggccgagagacggacaactagactgttcaggtca
gcctcagtaacatcccctcccaggattctagattccatcaaagagctttttgatagaaag
aagcgtcgggggaactcgctgtgtctgagtctggaggaggagctgtatgttcctgtaggg
atctgtctggctgccagggtccctgttagggctctgcatgtcctggatgcccatgagttg
ggcattaatgcagtgaggttcagctccagttgtaacctgcttgctactggagggacagac
agatgcattaagctgtgggacgttaaagcaggcatgctccacaacagaggtacactagat
ggcagcaacgaaggaataaccagcatagagtttgaccaaacaggcaccagggttatagca
gcgtcatatgataaatcagctctgttctggcggctggatgactctgctcccaagctcact
ctgacaggccactcacgtaaagtgacagcagccaagtttaaatgcagcctgcgccaggtg
gtgacaggaagcgcagacaggaccgtcaagatctgggatctccaccgcgctgcttgtatc
cagaccattgaggttctatcttactgcagtgatgtggtgtgttctgagcacgtcatcgtc
agtggacactatgacaggaagatacgcttctgggacagcagggctgccagctgtacccag
gaggttcctctccaggggaaggtaacatctctggacatctctactgaccaccgtcagctc
ctcagctgctccagagacgagagtctgcaggtggtcgaccttcgcatgaacagctccagg
atatgcttcagagctgagggcttcaaatgtggctgtgacagcaccaaggctatattcagt
cctgatgggagctacctggcagcaggatcagcagatggggccgtttacatctggaacgtc
aactctggcaacctggagacacgactaccggacatgcacaggtag

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