Oncorhynchus keta (chum salmon): 118381379
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Entry
118381379 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-5-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118381379
Transcription factors [BR:
oke03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118381379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MATalpha_HMGbox
Motif
Other DBs
NCBI-GeneID:
118381379
NCBI-ProteinID:
XP_052347970
EnsemblRapid:
ENSOKEG00005040080
LinkDB
All DBs
Position
33:13580579..13718710
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AA seq
762 aa
AA seq
DB search
MLTDPELPQEFNRMSSKRPISPYGGTDGEVVMATSRQRLEEEERDDGQAVMHLPLTPYCS
KVSPLSPRPLDXPPTLHSAMDQDGSKHWSLSPYPQNNSSTSPGSKQQVEEGGSGAAALGT
PERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGHFGEIKGT
SESLAEKERQLMGMISQLSSLREQLLAAQDEQKKVAASQMEKQRQQMELAKQQQDQIARQ
QQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAVAAAQQGFLLPPGFNYKPG
CSDPYPLQLVPTTMAAAAAAATPGLGQLQLQQLYAAQLAAMQVSPGAKHSSMSQTNLNTH
SPTNTHHEKSRSTPPPKPKDEGAQPLNLSSKPKTASESKSPTSPASPQVPTMKLGHHGTG
SMKHSTAPSSVGGPPSRVSSIDLLSSLSSGGYLNDHEAVTKAFAEARQMKEQLKREQQVL
DAKVAAVNNLSLNNGRSDKEKAALESLSHQLKQQTEDREKFNHTMMDFTMSGDSDGSPSV
SDSRMFREARGRGNSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSM
TNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMR
QYFTVGQQAQLPLSSAGVVYPGALSLAGLPSPQMPSEHSSLSSSPEHAAPPLQTPYHPSL
KGDETRVKQEELRLDDSNGDAYDDFDYEDEEGDYGSDNDNHQ
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgctcacagaccctgagctacctcaggagtttaacaggatgtcttccaagcgaccaatc
tctccatatggggggacagatggagaagtagtcatggcaaccagcagacagagactggaa
gaggaagagagagatgatggacaggctgtcatgcacctccccctgactccctactgcagc
aaggtgtcccccctctctccccgccccctggacnagccccctaccctgcacagtgccatg
gaccaggatggcagtaagcattggtctctgagtccctacccccagaacaactcctctacc
tctccaggcagtaagcagcaggtggaggaggggggttcaggggccgcagcgctggggacc
ccagagagacgtaagggcagcctggctgacgtggtggacacactaaaacagaggaagatg
gaggagctcatcaaaaacgaaccagaagaagcccccagcattgagaggctgttgtctaag
gactggaaggacaagctgttggccatgggatcaggacattttggagaaatcaaaggtacc
tcagaaagcctggcagagaaggagcgccagctgatgggcatgatcagccagctgagcagc
ctgagggagcagctcctggcggcccaggatgagcagaagaaagtggccgcctcgcagatg
gagaagcagcggcagcagatggagctggccaagcaacaacaggaccagattgctcggcaa
cagcagcagcttctgcagcagcaacacaaaatcaacctcctgcagcaacagatccagcag
gtccaggggcagctgcctccgttgatgatcccagtgttccctccagaccagaggactctg
gctgtagctgctgcccagcaaggcttcctgctgccccccggattcaactacaaaccaggc
tgcagtgacccttaccctctccagctggtacctactaccatggcagcagctgctgccgcg
gcaacgccaggcctcggtcaactacagctccagcagctgtatgcagctcaactggcagca
atgcaggtgtctccaggggccaaacacagcagtatgtcccagaccaacctgaacacccac
tctcccaccaacactcaccatgagaagagccgcagcaccccgccgcccaaacccaaggac
gagggtgctcagcccctgaacctgtcgtccaagcctaagacagcaagcgagagcaagtca
cccacctcccccgcttccccacaggtccccaccatgaagctgggtcaccatggcaccggg
tccatgaaacacagcacagccccctccagcgtcggaggaccaccgtccagagtcagctcc
atagacctgctgtcatccctgtcctcggggggctatctgaacgaccacgaggctgtgacc
aaggccttcgctgaggccagacagatgaaggagcagctgaagagagaacagcaggtgttg
gacgccaaggtggccgccgtcaacaacctcagcctgaacaacggacgctccgacaaggag
aaggcagctctggagagtctgagccaccagctgaagcagcagacagaggacagagagaag
ttcaaccacaccatgatggacttcaccatgagtggagactcagatggcagccccagtgtg
tctgattccaggatgttccgtgaggcccggggccgaggcaacagcgaaccacacattaaa
cgacccatgaatgctttcatggtctgggcaaaggatgagaggaggaagattctccaggct
ttccccgacatgcacaactccaacatcagcaaaatcctcggttctcgttggaagtccatg
actaaccttgagaagcagccgtactacgaggagcaggccaggctgagcaagcagcacctg
gagaagtacccggactacaagtacaaaccccggcccaaacggacctgtctggtggacggg
aagaagctgaggattggagagtacaaggccattatgaggaaccgccggcaggagatgaga
cagtacttcactgtgggacaacaggcccagctgcccttgtcctcggcgggcgtggtgtac
ccaggtgccctttccttggcaggcttgccctccccccagatgccctcggagcactcctca
ctgtccagcagccccgagcacgccgccccacccctccagaccccctaccaccccagcctc
aagggagacgagacccgagtcaaacaggaggagctgcgattggacgacagcaatggtgat
gcgtacgacgactttgattatgaggatgaggagggagattatggaagcgataacgacaac
caccaataa
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