Oncorhynchus keta (chum salmon): 118381391
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Entry
118381391 CDS
T09424
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118381391 (scaf4a)
03041 Spliceosome [BR:
oke03041
]
118381391 (scaf4a)
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118381391 (scaf4a)
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
118381391 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118381391
NCBI-ProteinID:
XP_052377699
LinkDB
All DBs
Position
6:complement(3388336..3438069)
Genome browser
AA seq
1010 aa
AA seq
DB search
MDAVNAFNHELFSLMDMKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGMDKDVFGPRFTKNITGTFENLCLCPTEERSKIVRVLNLWQKN
GVFKMEIIQPLLDMATSGSSCVADTEMDDPDPGFPSSPSPVKGKVTSVTENTVVAPVSQL
QNSDAFAAVAQLFQSSKGQQLQQIFQNFQQNPLKPQTHPFPPQTHSHPHPQPHPQPHPQP
HLQPQPHLQPQPHLQPQPHLQAQPHPQPHLQAQPHPQPHLQAQLHLQPHLQAQPHPQPQH
QAPPQHQAQPHHQAQPQPPANLHHLHSQLHLQSLTPALGTTAQRLPLPSSELSQQKTAFD
KVATLLDRFDYDDEPEGADESKKDQTSFTQQPPGFPQHFQQHMMGMVQDLPRQISLPPNG
QLQGYGLLPGQAYPGMVVPPGQLLPGTGPPGFPGGYPPNKDAFGQHVGQQEQDMNMDLDP
PSMKDGRHRPDGRKSPSGSRSPKRRRSRSISRTHRSRDRRRHSPRSRSQERREREKEKER
ERERRQKGLPQPKADTLSVCSTTLWVGQLDKRTQQQDVACLLEEFGQIDSINMIPPRGCA
YIVMVHRQDAFRALQKLSRGSYKVNQKAIKIAWALNKGIKAELKLYWDVELGVTFIPWSK
IRQDQLEDVREGGTLDPDTLDPEWRCVQNNQETPEEFRQNGRSEPLATLEDAAGTAPVDA
PVQVHPVQVQSMGSVGSLQQHPSFPPGPGPPGGPPMGLPPPSFPPGVPPGPPPSFMRPGP
RFNPMQMMPPGFLPPGSMPLGPSGPPPSAAGGVGVVELSLDPAGLGNQVPGPPGGSPGGP
IPLSGGLLGARPGMIPLQRPPVHSPGPVLPPPHMQRFPPPHGGPHGPHPPRGPPHHNMPP
QMMPPNRGPHPHMIHHDGPPLPPGGPRGFGMGMPPSHPMRGPFPPHGPPPGGPPPPFMRG
GPRGPDGPEEIEGRGPFRGERPGFRDRDPDRERERDWERDRERFGGGGRR
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtaaacgcttttaaccacgagctgttctccttgatggacatgaagccccca
atatctcgagccaagatgatatccatcaccaagtcagccatcaaagctatgaagttatac
aaacacgtggtccagattgttgagaagttcattaaaaagtgtaagccggagtacaaggtg
gcaggtctatatgttgtagactccatcgtccgacagtcccgtcatcagtttggcatggac
aaggacgtgttcgggccacggttcaccaagaacatcacgggaacgtttgagaacctctgt
ctatgtcccactgaagaacggagtaagatagtgcgtgtgttgaatctgtggcagaagaat
ggtgtgtttaagatggagatcatccagcctcttctagatatggcgacatctggttccagc
tgtgttgcagacaccgagatggacgacccagacccaggtttcccctcatccccatcacca
gtaaagggtaaggtcacctcagtaacggaaaacactgttgtggcgcctgtctctcagctt
cagaactctgacgcgttcgccgctgtcgctcagctcttccagtcctcaaagggacaacag
cttcaacaaattttccagaactttcaacaaaatccgttaaagcctcagactcatcccttc
ccaccccagacccacagccaccctcatcctcaacctcatcctcaaccccatccccagccg
catctccagcctcaaccccatctccagcctcaaccccatctccagcctcaaccccatctc
caggctcaacctcatccacagccgcatctccaggctcaacctcatcctcaaccccatctc
caggctcaactccatctccagccgcatctccaggctcaaccccatcctcaaccccagcac
caggctccaccccagcaccaggctcaaccccatcaccaggctcaaccccagcctcctgcc
aacctccaccacctccactcccagctccatctccagtccctgacccccgccctgggtacg
accgctcagcgactccccctcccctccagcgagctcagccagcagaaaacagcgtttgac
aaggtggctacgctgttggaccgttttgactatgacgatgagcctgagggagccgacgaa
tcaaagaaggaccagacgtcttttacccagcagcctccaggttttccccagcactttcaa
caacacatgatgggcatggtccaagacctcccacgccagatatctctgcctcctaacggc
cagctacagggctatggtttgctgccgggccaggcctacccaggaatggtggttcctcca
ggtcagctcctccctggtacaggacctccaggcttccctgggggataccctccaaacaag
gacgcctttggccaacacgtgggccagcaggaacaggatatgaatatggacctggacccc
ccctccatgaaggatggaagacaccgaccagatggcaggaagtcaccatcgggatctagg
tctcctaagaggaggcggtcgcggtccatctctagaacacaccggtccagagaccgccgc
agacactccccgcggtcacgctcccaggaacgcagggagagggagaaggagaaggagagg
gagagggagagacgacagaaaggactgccacagcccaaggctgacacgctgagcgtgtgt
agtaccactctgtgggtgggtcagctagacaagagaacccagcagcaggatgtagcctgt
ctactggaggagtttggacagatagactccatcaatatgattcctcctcgaggttgtgcc
tacatcgtcatggtccacagacaggatgcattcagagctctgcagaaactcagcagagga
tcctacaaagtcaaccagaaagccatcaagatcgcgtgggccttgaataaagggatcaag
gcggagttgaagctgtactgggatgtggagctgggcgttaccttcatcccctggtcgaag
atacgacaggaccagctagaggacgtcagagagggagggacgctggacccagacacactg
gacccagagtggaggtgtgttcagaacaaccaggagacaccagaggagttcagacaaaat
ggccgctctgagccgttagccacactggaggacgcagctgggaccgcacctgtagacgct
cctgtacaggtgcatccggtccaggtgcagtcgatgggaagtgtaggttctctccagcag
cacccctccttcccccctgggcctggccctcctggtggtccccccatgggcctgcctccc
ccttccttcccccctggtgtcccgcccggtcctcctccctccttcatgagaccgggacca
aggttcaaccccatgcagatgatgccacctggtttccttccgcctgggtcgatgccattg
ggcccctctggcccccctccctcagcagcagggggtgtaggggtagttgaactgtctctg
gatccagccggcctgggtaaccaggtgcctggtcctccagggggctcaccaggcggtccc
atcccgctgtctggaggtcttcttggggctcgccccggcatgatccccctccagcgcccc
ccagtccactctcctggtccggtcctccccccacctcacatgcagcgcttccctcctccc
cacggtggcccacatggcccccacccccctcggggccctccccaccacaacatgccaccc
cagatgatgccacccaacaggggcccccaccctcacatgatccaccacgatggcccccct
ctgccgcccgggggcccacgtgggtttgggatgggcatgcccccttcccatcccatgagg
ggtcccttccctccccacgggcccccccctggggggcccccaccacccttcatgaggggg
ggccctcgagggccagatgggccggaggagattgaggggagggggcccttcaggggggag
agacctgggtttagggacagggatccagacagggagagagagagggactgggagagggat
agggagaggtttggtggaggggggaggcgg
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