Oncorhynchus keta (chum salmon): 118382149
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Entry
118382149 CDS
T09424
Symbol
smarcal1
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oke03036
]
118382149 (smarcal1)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
118382149 (smarcal1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HARP
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
Flavi_DEAD
DEAD
Motif
Other DBs
NCBI-GeneID:
118382149
NCBI-ProteinID:
XP_052377793
LinkDB
All DBs
Position
7:complement(55906134..55938790)
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AA seq
921 aa
AA seq
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LNSRPGLTHHPPNTVLQNDVPRGQDRRPNQLFSSPRDKSGQNSLFSNTATKQIKVIDPLP
LPKGQHSLKGLDVSTGGSPSVFKPLQPKTTGCPSSSVSGSSTGTGSSYGAKSSSSSSSSS
SGQNVSSVFKPPQLNKSVLPGPYPTSTSATGSFSVSKPHPKTSSSGLSSHSAVGSFYKRG
TKHGATSPSVQSAAPSSGTDVSNSLPGKNPAVTVRGKCVSHSEERFRVEVGYHAELIAVF
KNIPSRNYDPATKMWNFSLEDYRQLMEESGSISCICLKPLVGGIDVAPASSRSRDTAALG
ALLKLCSGWQRPGATVQGHATLVSRSRFEVDVGYHVDVIAAFKQMPSKNYDMKTRRWSFL
LEDYKRLMDALGAIPSVEIEPLPRGVIQVFSALFQGSQTWPSEVPEADLSSIDPSLTGRL
MPFQRDGVNFAVSKDGRXLLADDMGLGKTVQAICIAAYYRKEWPLLVVXPSSVRFTWAEA
FRQWLPSVQPDRINVIVXGKDNLRGGLVNIISYDLLSRMDKQQAANPFNVLIMDESHFLK
NMKTARFKAALPLLKVAKRVILLSGTPAMSRPSELYSQILAVKPSLFPHFRDFGTRYCNA
RQLPWGWDYSGSSNLGELKLMLEESLMLRRLKSEVXSQLPAKQRKVVTVTTDGINTRIKA
ALSAAANDLTKGQHNNNKMKQALLVFFNHTAEAKIKAIMEYIMDMLECGREKFLVFAHHK
LVLDFITKELGEKGIDYIRIDGSTPSLERQQLCDRFQLTDESCVAVLSITAANMGITLHS
AALVVFAELFWNPGIMIQAEDRVHRIGQTSNVDIHYLVAKGTADDYLWPMIQEKMHVLEQ
VGLSESNLSEKAESASFHSKDSQQRRITEMFQRSFTEGEDDMDEALLLEAVGAWDDPSNQ
TGCDVEESPSKKRRIEDYFDR
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
ctcaactcccgaccaggactaactcatcatccacctaatactgtgcttcagaatgatgtt
ccacggggtcaagacaggagacctaaccagttgttttctagcccaagggacaagtctgga
cagaattcactattctccaatactgccactaaacagattaaagtaatagacccactacct
ctcccaaagggacaacattcattgaaagggttagatgtgtctacaggaggaagcccctca
gtgttcaaaccacttcagccaaagacaacaggttgcccatcatcttctgtttctggaagt
tccactggtactggtagttcatatggagccaagtcatcatcatcatcatcatcatcatca
tcaggccagaacgtctcctctgtgttcaaacctccacagctgaataaatcagtattacct
ggtccgtatcctacttctacaagtgcaactggcagtttctctgtttctaaacctcatcca
aagacctcttcctcggggctgtcttcccattctgccgttggtagtttctataaacgagga
accaaacatggagccacatcaccatccgtccagagtgctgctccctccagcggtactgat
gttagtaactctctacctgggaagaaccctgccgtcacagtcagagggaaatgtgtctct
cactcagaggagcggttcagagtggaagtcggttaccacgctgagctgattgctgtgttc
aaaaacatcccttctcggaactatgaccctgctaccaagatgtggaacttcagccttgag
gactatcgtcagctgatggaggagtctggctccatctcctgtatatgtctgaaacctctg
gtggggggtattgacgtggcgccggcgtctagccggtcccgtgacactgctgcgcttggg
gccctgctgaagctgtgtagtggctggcagagaccaggggccaccgtacagggccacgcc
accctggtgtcacgatcacgcttcgaggtcgacgttgggtaccatgttgacgtcatcgct
gctttcaaacagatgccttccaagaactatgatatgaagacaagaaggtggagtttcttg
cttgaggattataaaagacttatggatgctctcggtgccattccatcggtagagattgag
cctctccctagaggtgtgatccaggtgttctctgccctgtttcaaggcagccagacatgg
ccatcagaggttcctgaagctgacctgtcctccattgacccctcattgacaggtcgtctc
atgcccttccagagagacggtgtcaactttgcggtgtccaaagatggccgcntcctcctg
gctgatgacatgggactggggaagacagttcaggccatttgcatagctgcctactacagg
aaagagtggcctttattagtggtgngcccttcttctgtcagattcacctgggctgaggcc
ttcaggcagtggctgccctctgtgcagcctgaccgtatcaatgtgattgtcnaagggaaa
gacaacctgaggggtggtctggtcaacatcatcagctatgatctactgagcaggatggac
aagcagcaggccgctaaccccttcaatgttctcataatggacgagtcccactttctgaag
aacatgaagactgcccgctttaaggctgccttgccactgctcaaggtagctaagcgtgtg
atcctgctgtcggggactcctgccatgtccagaccctcagagctctacagtcagatcctg
gctgtcaagccctccctgttcccccacttccgtgactttgggaccaggtactgcaatgcc
cgacagctgccgtggggttgggactactctggctccagtaacctaggagaactgaagctg
atgttagaggagagtctaatgctacgccgtctcaagtcagaggtcncctctcagcttcct
gccaagcaacgcaaggttgtcaccgtgaccacagacggtatcaacacccgcatcaaggca
gctctgtctgccgcagccaatgatctgaccaagggacaacacaacaacaacaagatgaag
caggctcttctggtgttctttaaccacactgctgaggccaagattaaagccatcatggag
tacatcatggacatgctagagtgcggaagagagaagttcctggtgtttgctcatcacaag
ctggtcctggactttatcaccaaggagttgggagagaagggtatcgactacatccgtata
gacggctccacgccgtcgttagagcggcagcaactgtgtgaccggttccagctcactgac
gagagctgtgtagcggtgctctctatcactgcagctaacatgggcatcaccctgcactcc
gctgctttggtggtgtttgctgagctattctggaaccctgggataatgatccaggctgag
gacagagtgcaccgtatcggtcagaccagcaatgtggacattcactacctggtcgccaag
ggaaccgcagatgactacctgtggcccatgatccaggagaagatgcatgttctggagcag
gtgggcctatcagaatccaacctgtcagagaaggcggagtctgccagcttccactccaag
gactcccagcagaggaggatcacagagatgttccagaggtcgttcaccgagggggaggat
gatatggatgaagctctcctattggaggctgtgggggcctgggatgaccctagcaaccaa
acaggatgtgatgtagaagagagccccagcaaaaagagacgcatagaggactactttgac
agataa
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