Oncorhynchus keta (chum salmon): 118382411
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Entry
118382411 CDS
T09424
Name
(RefSeq) general transcription factor IIF subunit 1 isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118382411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118382411
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
118382411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
118382411
NCBI-ProteinID:
XP_052375326
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All DBs
Position
5:complement(27931394..27950922)
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AA seq
558 aa
AA seq
DB search
MASLGGSSSSSTEYIVRVPKNTSKKYSIMAFNSGDKVNCSSWTQARMERDMSNRRMYGVE
ETEEGAAGSEFGKKQREEARRKKFGIVTREFKVEDQPWILKVNGKAGKRFKGTKKGGITE
NASYYIFTQCPDGAFEAFPVNGWYNFVPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQR
RLREQERGPDDDDEEGEKGGKKKKKKGGRGGDLRIHDLEDDLELSSDETDSSGGEGEERR
ELSSDERDSSGGEDGDSKPKKKEGDVKGKGKKKKKKKRGSDSEANEDSDDGDFEGLEVDY
MSDESSSEEEVGEEKAKSNKEAVPKGIDEASESEEESEEEKPNEEEGKEEEEEEEGKKTP
VQTKKKRDSSGESDTSEDSDIDGEAASALFMVKKRTPPKRGGGRGSGGSSRTGSRPGTPS
IDSASTSNTLRAAASKLEQGKRQVVGGSSESPAAKRLKMESSSTAVTTQSPAPSGKSTPQ
PPSGKSTPSSSDVQLTEEAVRRYLIRKPMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKR
LNPERKNVNDKMHFYLTE
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcattgggtggcagcagttcctcttctacagagtacatagtccgggtccccaag
aacaccagtaagaagtacagcatcatggcctttaactctggggacaaagtaaactgctcc
tcctggacccaggctcgtatggagcgggacatgagtaacaggaggatgtatggtgtggag
gagactgaggagggggcggcaggcagtgagtttgggaagaagcagagggaggaggcacgc
aggaagaagtttggaatcgtcaccagggagttcaaggtggaggaccaaccctggatcctc
aaggtcaacggcaaggcagggaagaggttcaagggtacgaagaaagggggcataacggag
aatgcgtcctactacatctttacccagtgtcccgacggggcctttgaggccttccccgtc
aacggttggtacaacttcgtgccccaggccaaacaccgcacgctgaccgccgaggaggca
gaggaggagtggggcaggaggaacaaggtggtgaaccacttcagcatcatgctccagagg
cgcctgcgggagcaggagagggggccggacgatgacgacgaggaaggcgagaaggggggg
aagaagaaaaagaagaagggaggaagaggaggggacctgcgcatccatgacctggaggat
gacctggagctgagcagtgatgagacagacagcagtggaggagaaggtgaggagagaaga
gagctgagcagtgatgagagagacagcagtggaggagaagatggagacagcaagcccaag
aagaaagagggggatgtgaaggggaaggggaagaagaagaagaagaagaagaggggaagt
gacagcgaggctaatgaggacagtgacgatggagactttgagggcctggaagtcgactac
atgtcagatgagagcagttcagaggaagaggtcggcgaagagaaggcgaagtccaataaa
gaggctgttcccaaaggaatcgacgaggcatcggagagtgaggaagagagcgaggaggag
aaaccgaacgaggaagagggtaaagaggaggaggaggaagaggaagggaagaagacccca
gtccagacgaagaagaagagagacagcagtggtgagtcggacacttcggaggacagcgac
atcgatggagaggcagcctccgctctcttcatggtgaagaagcgtactcctcctaagcgc
ggtggtgggcgtggctctggaggcagctccaggactggcagtcgccctggaacaccgtcc
atagactccgcctccacttccaacacactccgagccgccgctagcaaactggagcaaggt
aagagacaggtggtgggtggtagctctgagtctccagctgccaagaggctgaagatggag
tccagcagtacggctgtcaccacccagagtcctgccccctcagggaagagcacgccacag
cccccctcaggaaaatcaacccccagttccagtgacgttcagctgacggaggaggcggtg
cgtcgctatctgatccggaagcccatgaccaccaaggacctgctgaagaagttccagacc
aagaggactggcctgagcagcgagcagactgtcaacgtcctggcccagatcctcaaacgc
ctcaaccccgagaggaagaacgtcaacgacaagatgcacttctacctcacagagtaa
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