Oncorhynchus keta (chum salmon): 118383157
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Entry
118383157 CDS
T09424
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oke03016
]
118383157 (rtcb)
Enzymes [BR:
oke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
118383157 (rtcb)
Transfer RNA biogenesis [BR:
oke03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118383157 (rtcb)
Prokaryotic type
tRNA splicing ligases
118383157 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
118383157
NCBI-ProteinID:
XP_052357318
LinkDB
All DBs
Position
Unknown
AA seq
526 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMQVEGVFYVNESLEKLMFEELRNACKGGGFG
GFLPAMKQIGNVAALPGIVHKSIGLPDCHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMTAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIQVNDRQLACARIFS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQVPPSSTRAFPPHHPLIPVDYQLTGQPV
LIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNIDFQDVLDKLADKGIAI
RVASPKLVMEEAPESYKNVCDVVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcgtacaatgacgagttacaatatttggacaagattgacaagaactgctgg
cgaatcaagaaaggtttcgtcccaaatatgcaggtggaaggagttttttacgtcaacgag
tccctggagaagctgatgtttgaggagctgcgtaacgcgtgtaaaggaggaggttttggt
gggtttctccccgccatgaaacagattggaaacgttgcagctctgccgggtatagtccat
aagtccatcggcctgccagactgccactcagggtatgggttcgccataggaaacatggct
gcctttgacatgagcgaccccaacgctgtcgtatccccaggtggtgtggggtttgatatt
aactgtggagtgcgtctactaaggaccaacctagatgagggagacgtccagcctgtcaag
gagcagctggctcaggccctgtttgaccacatccctgtaggagtcggctccaagggagtc
atccctatgactgccaaggatctagaggaggctctagagatgggagtggactggtccctc
agagaaggctatgcctgggcagaggataaggagcactgtgaggagtatggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggcctgcctcagctgggt
actctgggggcagggaaccactacgctgagatccaggtggtggatgagatctataatgac
tatgctgctaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagt
ggcagcagggggctgggccaccaggtggcgacagatgccctggttgccatggagaaggcg
atgaagcgagacaagatccaggtgaacgatcgtcagctggcgtgcgcccgtatcttttca
gaggagggacaagactacctgaaaggaatggctgccgccggcaactatgcctgggtcaac
cgttcctctatgaccttcctcacacgacaggcgtttgccaaggtgttcaccaccactcct
gatgacctggacatgcatgtgatctatgacgtgtctcataacatcgccaaggtggaggaa
cacatggtggatgggaaacagaagactctgctgctgcatcgcaagggatccacccgggcc
ttccctccacaccaccccctcatccctgtagactaccaggtacccccttcatccacccgg
gccttccctccacaccaccccctcatccctgtagactaccagctgacaggccagccggtg
ttgatcggtggcacgatgggcacctgcagttacgtcctgacgggcacggaacagggcatg
acggagaccttcggcaccacctgccacggcgcgggtcgggctctgtctcgggccaaatcc
cgcaggaacatcgacttccaggacgtgttggacaagctggcagacaagggtatcgccatc
agggtggcttcgcccaaactagtcatggaagaggctccggagtcgtacaaaaacgtgtgt
gatgtcgtcaacacgtgtcacgatgctggaatcagcaagaaagccatcaaactacgaccc
atcgccgtgatcaaggggtaa
DBGET
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