Oncorhynchus keta (chum salmon): 118384129
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Entry
118384129 CDS
T09424
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118384129 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118384129 (xab2)
03041 Spliceosome [BR:
oke03041
]
118384129 (xab2)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118384129 (xab2)
Spliceosome [BR:
oke03041
]
Complex B
Other components
Prp19-related factors
118384129 (xab2)
Complex C
118384129 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
SNAP
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
118384129
NCBI-ProteinID:
XP_052374478
LinkDB
All DBs
Position
5:complement(4355316..4371232)
Genome browser
AA seq
851 aa
AA seq
DB search
MPPLNGKPDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGVKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPSYEEINNCHERALVFMHKMPRIWLDYCQFLVAQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCSKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATGTISDLAPGQMGLDDMKLLEQQAQLLAAEAEQ
DKPKLKEKILFVRSDTSRSELAELAKQANPDEIDIEDEDEDGDEDQGPEEVQLEQKSVPT
AVFGGLKEGED
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgccccctctaaatgggaaaccggacgtcatgtttgaggaagatgacctgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgctacatcgagttcaaa
cagaatggcgtcaagtcagtcctcaacatgatctatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcacggagccatcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatctggctggactactgccagttcctggtggctcagtgtaag
atcaccaggagcagacgcacgtttgaccgagcactccgagccctgcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctacccctgcctgagaccgcc
atccgtgtctatcgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tatctgcgttcctgcagcaagctggatgaagcagcagtgcgtctggcagccgttgtcaac
gatgagagctttgtgtccaaggagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgtttcacagaccagctgggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagacaacctccgagatggggaaagatgaagaagaggacata
gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctcagacagaacccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctac
gaggagaacgagcagctggacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggggagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcggagtactttgacgtgtcagagccggtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg
gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtatgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcactaagttcatc
gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaagcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcatgccatggcggtgtacgaaagagccacgcaggcggtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggcgtc
acctacaccagagctatctaccagaaagccattgaggtgcttccagacgaacactccagg
gacatgtgtctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggacga
gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag
acatggaaggagtttgagatccgccatgggaacgaagacactatccgggaaatgctgagg
atcaagcgtagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccggcaccatctcagatcttgccccgggccagatgggg
ctggatgatatgaagctgttggagcagcaggcccaactgctggccgccgaggctgaacag
gacaaacccaaactcaaagagaagatcctcttcgtcaggagtgacacgtcacgcagcgag
ctggctgaactggccaaacaagccaaccctgatgaaattgatattgaggatgaggatgag
gatggtgatgaagaccagggccctgaggaggtgcagctggaacagaagagcgtccccacg
gctgtctttggagggctgaaagaaggagaagattga
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