Oncorhynchus keta (chum salmon): 118384252
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Entry
118384252 CDS
T09424
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04137
Mitophagy - animal
oke04140
Autophagy - animal
oke04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118384252
04137 Mitophagy - animal
118384252
04148 Efferocytosis
118384252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118384252
Transcription factors [BR:
oke03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
118384252
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
118384252
NCBI-ProteinID:
XP_035626514
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All DBs
Position
1:complement(37253285..37272321)
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AA seq
630 aa
AA seq
DB search
MDTKEDPVAQRSGTDQRKVRSRDAARCRRSQETELFYELAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSAGDTSEERVTDGDEDTMDGFYPRALAGFIMVMTEEGDMIYLGDSVDK
HLGIQQLELLGQSVYDFVHPCDQEELRDLLVPRPGVFKKKPVQQHTEITFFLRMKSTLTV
RGRTVNIKSATWKVLHCTGHMRVFSSDEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTF
LTRHSMDLRFTHCEGRVAELVGYEPEDLIGKSAYEFHHALDSDHVTKSLHILLSKGQVCT
SQYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLK
SDPVSEASEETLCDSDNSSSGELFQQLKENPEDLLQLAPVSGDPIVPLTDFAELSFSLPS
SPDSAPVFPQDLCTPELWTLLSPIFDKPTSSSPTPALIPIEELPIEDEVEKLFAVCPEEV
MQKEDQPEDVEVVDLDMLAPYISMDDDFLLSVQLPGIPDSPSPEPPTATRKRSHEQDEDM
PSQLMSQDKRLRHSVSPIEQELLLSYTLLDCLEDTDSPELELGPHPHRRSQLLTDRDPIL
GEAQGRCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaggaagatcctgttgcacaacggtcgggtacggatcagcggaaggtgcgt
tcccgggatgcggcacgctgccgacggagtcaggagacggagctgttctacgagctggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcagcaggggacacgagtgaggag
cgcgtcacagatggggacgaggacacgatggatgggttctacccccgggcgctggcaggt
ttcatcatggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcgacaaa
cacctgggcatccaacagctggagttgctgggtcagagtgtgtatgactttgtccaccca
tgtgaccaagaggagctacgggatctcctggtgcctaggccaggtgtattcaagaagaaa
ccagtgcagcaacacacagagattaccttctttcttaggatgaagagcactctgactgtt
agagggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccac
atgcgtgtgttctccagtgacgaggattcgtcaccccctgcaggcagcttcatgacggtg
ctgtgtgagcccatcccccacccgtcaagtgtggagttccctctggaccgcagtaccttc
ctcactcgacacagcatggacctgcgcttcacacactgcgagggcagggtggcagagcta
gtgggatacgagccagaagatctgattggcaaatctgcctacgaattccatcatgccctg
gactcggatcatgtgaccaagagcctgcacatccttctatctaaaggccaggtgtgcacc
agccaataccgttttctggctaagagtgggggcttcgtgtgggcagagacccaggctaca
gtcatctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctc
agtgtggtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaag
agtgatcctgtctctgaggcctcagaggagactttgtgtgacagtgacaacagcagcagt
ggagagctcttccaacagctgaaggagaacccagaggacctcctccaactggcccctgtc
tctggagaccccatcgtacccctcacagactttgcggagctgtcgttcagccttccatca
agccctgactccgccccagttttcccacaggacctgtgcacccccgagctgtggacgctc
ctctcacccatattcgacaagcccacctcatcatcaccaacaccagcactgatccccatt
gaggagctgccaatagaggatgaggtggagaagttgtttgccgtctgtccagaagaggtc
atgcagaaggaagaccagcctgaggatgtggaagtggttgatctggacatgctggcaccg
tatatctccatggatgatgatttcctgctcagcgtccagctccctgggatccctgacagc
ccctccccagagccccccactgctaccaggaaacggagccatgagcaggatgaagacatg
ccctcccagctgatgagtcaggacaagagactgagacactctgtgtcccccatcgagcag
gaactgcttctcagctacaccctattggactgcctggaggatacagatagcccagagttg
gagctggggccacacccccacaggcggagtcaactgctgacggacagagaccccatcctc
ggggaagcccagggacgatgtgacaccgcagccttgatgagggacctcttcttgtcccgc
ccacctgaccccctgacctcttctctgacttga
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