Oncorhynchus keta (chum salmon): 118384419 Help Entry 118384419         CDS       T09424                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K06236   collagen type I alpha Organism oke  Oncorhynchus keta (chum salmon) Pathway oke04510   Focal adhesion oke04512   ECM-receptor interaction oke04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oke00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     118384419  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     118384419   09142 Cell motility    04820 Cytoskeleton in muscle cells     118384419  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oke00536]     118384419 Glycosaminoglycan binding proteins [BR:oke00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    118384419 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  118384419 NCBI-ProteinID:  XP_035626829 LinkDB All DBs Position 5:complement(7680955..7702616) Genome browser AA seq 1449 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDRTAGSCTLDGQYYNDRDVWKPEPCQICVCDSGT VMCDEVICEDTSDCPNPVIPHDECCPICPDDGFQEPKVEGPQGDRGAKGEPGPAGFPGND GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGGMSMPGPMGPMGPRGPPGPPGS SGPQGFTGPPGEPGEAGSSGPMGPRGPAGPPGKNGDDGESGKPGRPGERGASGPQGARGF PGTPGLPGIKGHRGFSGLDGAKGESGPAGPKGEGGASGENGAAGAMGPRGLPGERGRAGP NGAAGARGNDGAAGAAGPPGPTGPAGAPGFPGGPGAKGEVGAQGARGGEGPQGSRGEAGN PGPAGPAGLAGNNGADGNPGTKGAPGSAGIAGAPGFPGPRGPPGPQGAGGAPGPKGNTGE VGANGAKGEAGAKGESGPAGVQGPAGPAGEEGKRGSRGEPGAAGARGAPGERGGPGSRGF PGSDGAAGPKGGPGERGGAGVAGAKGNTGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGP SGAGGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPGGAVGAPGKDGD VGAPGAPGVAGPSGERGEQGAGGPPGFQGLSGPQGAIGETGKPGEQGLPGEGGAPGSAGS RGDRGFPGERGAPGPSGPSGARGSPGSAGNDGAKGEAGAAGAPGGQGPPGLQGMPGERGA GGLPGLKGDRGDQGVKGADGAGGKDGVRGMTGPIGPNGPAGSPGDKGETGAPGAVGPSGA RGAPGERGESGAPGPAGFAGPPGGDGQPGAKGEAGDNGAKGDGGAQGPAGPTGAPGPQGP AGNTGAKGARGAAGPPGATGFPGAAGRVGPPGPSGNSGPPGPPGPGGKEGQKGNRGETGP AGRPGELGAAGPPGAQGEKGQPGGDGPNGPSGTPGPQGIGGQRGIVGLPGQRGERGFPGL AGQLGEPGKQGPGGPSGERGPPGPMGPPGLAGAPGEPGREGTPGNEGSSGRDGAAGPKGE RGESGVAGASGAPGPPGAPGSVGPAGKSGDRGESGPAGPAGIAGPAGPRGPSGPAGARGD KGEAGEAGERGMKGHRGFTGMQGPPGPSGQSGESGPAGASGPAGPRGPSGSAGAAGKDGM SGLPGPIGPPGPRGRSGEMGPSGPPGPPGPPGPPGPPGGGFDMGFIAQPSQEKAPDPFRH FRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTKKNPARTCRDLKMCHPDWKSGEYW IDPDQGCTQDAIKVYCNMETGETCVYPTEADIPKKSWYTSKNIKEKKHVWFGEAMTDGFQ FEYGSEGSNAKDVNIQLTFLRLMATEASQNITYHCKNSIAYMDQQSGNLKKSLLLQGSNE IEIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFG IEVGPVCFL NT seq 4350 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggctagcgctgttgctcagcgcaacagtgcttttggca agaggacaaggcgaggacgatcgcaccgccggcagctgtacgttggacggtcaatactac aacgacagagatgtctggaaacccgagccatgccagatctgcgtgtgcgacagcggcacg gtcatgtgcgacgaagttatctgcgaggacacatccgactgccccaatccagtgatcccc cacgatgaatgctgccccatctgccccgacgacggcttccaggagccaaaggttgaggga ccccagggtgatcgtggagccaagggagagccaggacctgctggtttccccggcaacgat ggtattcccggccagcccggccttcctggacccccaggcccccctggaccccctggcctc ggcggaaacttctcccctcagatgtctggtggttttgatgagaagagcggtggtggcatg tccatgcccggccccatgggccccatgggtccccgtggtcccccaggacctcctggctca agtggacctcagggtttcactggcccccctggtgagcctggtgaggctggttcttctggt cccatgggtccccgtggtcctgccggtccccctggcaagaacggagatgatggtgagtct ggcaagcctggtcgccccggtgagcgtggcgcttccggcccacagggagctcgtggattc cccggaacccccggccttcccggcatcaagggacacagaggattcagcggtctcgatgga gctaagggagagtctggccctgctggacccaagggagagggtggtgcatccggtgagaac ggagccgctggagccatgggaccccgtggtctgcctggcgagagaggccgtgctggtccc aacggagctgctggtgctcgtggtaacgatggtgctgctggtgctgctggtcctcctggc cccactggccccgctggtgcccccggtttccccggtggccccggagccaagggagaggtt ggtgcccagggagctcgtggtggtgagggaccccagggatcccgtggagaggctggtaac ccaggacccgctggccctgctggccttgctggaaacaacggtgctgacggaaaccccggt accaagggtgcccctggttctgctggtattgctggcgctcctggcttccctggaccccgt ggaccccccggaccccagggagctggtggagctcccggacccaagggtaacactggtgag gttggtgctaatggagccaagggagaggctggtgctaagggagagtctggccccgctgga gtccagggacccgccggccctgctggtgaggaaggcaagagagggtcccgtggtgagccc ggtgctgctggtgcccgtggagcccccggcgagcgcggtggccctggcagccgcggtttc cctggttctgatggagctgctggccccaagggtggtcctggtgagcgtggtggcgccgga gttgctggagctaagggtaacactggtgagcctggccgcaacggcgagcctggtatgcct ggatccaagggtatgactggtagccctggcagccctggtcccgatggcaagactggcccc tctggtgccggtggtcaagatggtcgccccggacctcccggccccgttggagccagaggc cagcccggagtcatgggattccccggacctaagggagccgctggtgagggtggcaagcct ggtgagagaggagtcatgggacccggtggcgctgttggcgctcccggcaaagatggtgat gttggtgctcctggtgcccccggtgttgccggaccttctggagagcgaggcgagcaggga gccggtggcccccctggattccagggactttcaggaccccaaggtgctattggtgagact ggcaagcccggagagcagggtctgcccggtgagggtggtgcccctggttccgctggatct agaggtgacagaggcttccccggtgagcgtggtgcccccggcccatctggaccctctggt gcccgtggctctcctggctctgctggtaacgatggtgctaagggagaggctggtgccgca ggagcccccggtggccagggaccccctggcctgcaaggaatgcccggagagcgtggtgct ggtggtctgccaggcctgaagggagacagaggtgaccaaggagtcaagggtgctgatggc gccggtggtaaggatggcgtccgtggtatgactggccccatcggaccaaacggccctgct ggctctcctggtgataagggagagactggcgctcctggagctgttggaccttctggtgcc cgtggtgcacctggtgagcgcggtgagtctggtgcccccggacccgccggattcgctggg cctcctggtggtgatggtcagcctggtgctaagggagaggctggagataacggtgccaag ggtgacggtggtgcccaaggacccgctggacctactggagcccctggacctcagggtccc gctgggaacaccggagctaagggcgcccgtggtgctgctggtccccctggtgccactggt ttccccggtgccgctggtagagttggacctcccggcccatcgggcaacagcggacccccc ggacccccaggccctggtggaaaggaaggacagaagggtaaccgtggtgagactggcccc gccggtcgtcctggtgagcttggagctgccggaccccctggtgcccagggagagaaggga cagcctggtggagatggtcccaatggaccctctggaactcccggacctcagggtatcggt ggacagcgtggtattgttggtctgcccggacagagaggcgagcgcggtttccccggcctc gccggacaactgggagagcctggcaaacagggacctggtggcccctctggtgagcgtgga ccccctggacccatggggccccctggactggctggcgcacctggtgagcctggtcgtgag ggaactcctggtaacgagggatcttctggtcgcgatggtgctgctggacccaagggagag cgtggtgagtctggtgttgccggtgcttccggtgcccccgggccccctggtgcccctgga tccgtcggccctgctggaaagtctggtgaccgtggagagtctggtcctgctggccccgct ggtattgctggccctgctggtccccgtggcccatctggacccgctggagctcgtggagac aagggagaggctggcgaggctggagagcgaggcatgaagggacacagaggattcactggc atgcagggaccccctggcccctctggacaatctggagagtcaggacctgctggagcctct ggccccgctggacctagaggaccttctggatcagctggtgccgccggtaaggatggtatg agcggtctgcccggccccatcggacctcccggaccccgtggtcgctctggagagatggga ccctccggaccccctggccctcccggtccccctggcccccccggacctcccggcggtgga ttcgacatgggcttcattgctcagccctctcaggagaaggcccccgatcccttccgtcac ttccgcgccgacgacgccaacgtgatgcgcgaccgcgacctggaggtagacaccaccctc aagagcctgagccagcagattgagaacatccgctctcccgagggcaccaagaagaacccc gcccgcacctgcagagacctgaagatgtgccaccccgactggaagagcggcgagtactgg atcgaccccgaccagggctgcacccaggacgccatcaaggtttactgcaacatggagacc ggcgagacctgcgtctaccccaccgaggctgatatccccaagaagagctggtacaccagc aagaacatcaaggagaagaagcacgtctggttcggcgaggcaatgaccgatggcttccag tttgagtatggcagtgagggctccaacgctaaggatgttaacatccagctgaccttcctg cgccttatggccaccgaggccagccagaacatcacataccactgcaagaacagcatcgcc tacatggaccagcagtccggcaacctgaagaagtccctgcttctccagggctccaacgag atcgagatcagagccgagggcaacagccgcttcacatacagcgtcaccgaggacggctgc acgtcgcacaccggtgcatggggcaagacagtcatcgactacaagacaacgaaaacatcc cgtctgcctattattgacatcgctcctatggacgttggtgcacccaatcaggaatttggc attgaagttggcccagtctgcttcttgtaa

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