Oncorhynchus keta (chum salmon): 118384441
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Entry
118384441 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3-like
KO
K14323
protein CASC3
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118384441
03015 mRNA surveillance pathway
118384441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118384441
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118384441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
118384441
NCBI-ProteinID:
XP_035626883
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Position
5:8674134..8690560
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AA seq
771 aa
AA seq
DB search
MISKMADRRRRRASQDSEEDDESGSGSESGKSLSPTTKLRVRDPEPVEAPAVRVVPKNDA
ESECESEDGVGEAVLSDYESADPEDNASHSEGGEEEEEEEEVPPTAAGPKPSPTADTPAA
EGELQEGGGKVEEGEKGLSKEVKCEDKGNLAGERQSGDGQESTEDSENKGAKPGQKLDDD
QDRNNPAYIPRKGMFFEHDVRGNAQEEERPKGRNRKLWKDEGRWEHDRFREEEQAPKSRE
ELVAIYGYDIRNGGVSNERSYRQRKPRHSTSPVRDKRWRDGDGERPIHTSWQQGGNPNSR
STPLAVALQQSGPPPSAAPNTQRNNNPPRPSSHPPPRGFQGNRPPQAQYRMTETRSLNGQ
APRPSPPRPGSLPPMDGERSPRGRGNRGAHTERSSSVVVEEICSEEDNERNTTVTTSPSQ
SVYHNRHYSGKGDRERDSAPRRQEQQRGGSAPPADNPVTRDASPAPERPVEKKSYSLARR
TRTRATELDKQASLEEPAPTVSSSALASEPWQGPSQSQGDAGDSSQATVLTGLDQDLARL
SLAGQNWAQNPTSFLRAEMRGIPNSMHMGGAPPQYSNIEELGAGNRAKRYSSQRQRPSPE
PAPPMHIGVMEGHYYEPMSYQGPIYAHGDSPAPLPPQGMLVQPEMHLPHPGHPGHPGLHP
HQSSGPMPNPALYAPPPVSMSPGQPPPQQLLAPPFYPPPGVMTFGNTNYPYPAGATLPPM
YNPPAQSQVYGGVTYYDPMQQQAQPKPSPPRRSSQPVTVKPPPPEVGYGPE
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgatttctaagatggcggaccggcgacggcggcgcgcgtcccaggatagcgaggaggac
gatgaatctggttcgggatcggaaagtggaaagtccctttcgccaacgacaaagctccga
gtacgggatcctgagccagttgaggcaccagctgttcgtgtggtgccgaaaaacgatgct
gaatccgagtgtgaaagtgaagatggcgtaggagaagctgtcctttctgactatgaaagt
gcagatcctgaggataatgcctcacattcagagggaggtgaggaggaagaggaggaggag
gaggtccctccaacggctgctgggcccaaacccagtcctactgccgacacccctgctgca
gagggggagctgcaggaaggaggggggaaggtagaggagggtgagaaaggtttgagtaaa
gaagtgaagtgtgaagataaaggcaacctggcaggggagaggcaaagcggggatggacag
gaaagcacagaagactctgagaataaaggtgctaaaccaggccagaagctggatgatgac
caggatcgtaataacccagcctatatcccccgtaagggaatgttctttgagcatgacgtc
agaggaaacgcacaggaggaggaacggccgaagggtcgtaacaggaagctgtggaaggat
gagggtcgctgggaacacgataggttcagggaggaggagcaggcgcccaagtcacgtgag
gagctggttgcaatctacggctatgacatccgtaacggaggtgtctccaatgagcggtcc
tatagacagcgcaagcccagacacagcacctctccagtccgggacaagcgctggcgggac
ggagacggggagaggcccatccatacctcctggcagcagggagggaaccccaacagccgt
agcactcccctagccgtggccctgcagcagtctggtcctcccccctcagcagcccccaac
acccagcgcaacaacaacccccccaggccctcctcccaccccccaccccggggcttccag
ggcaaccgccccccccaggcccagtacaggatgacagaaaccaggagtctcaacggccag
gccccaaggccgagcccccccagacccgggagcctaccgcccatggacggggaacgaagc
cccaggggccgggggaacagaggggcccatacggagcgcagctcttcggtagtggtggaa
gagatctgcagcgaggaggataacgagcgcaacacgacagtgacaacgtctccgtctcag
tccgtctaccacaatcgccactacagtggcaagggagatcgagaaagggactctgcgcca
cggcgacaggagcagcagcgagggggatctgctcctccggcagacaacccggttacccgc
gatgcctccccggctccggagcggcccgtggagaagaagtcgtactccctagccaggagg
actcgcacccgggccactgagctggacaagcaggcctctcttgaggagcctgcccccacc
gtgtcttcctcggcactggcgagtgagccgtggcagggccccagtcagagccagggggat
gctggagacagtagccaggcgacggtactcacagggctggaccaggacctggccagacta
agcctggctggacagaactgggcccagaacccaacttcgtttctacgcgctgagatgagg
ggcatccctaactctatgcacatgggtggagcacctccacaatacagtaacatagaagag
ctgggagctggtaaccgggcaaagcggtactcgtcccagcgccagaggccaagcccggag
cccgctcctcctatgcacataggggtcatggagggccactactacgagcccatgtcttac
caaggaccaatctatgcccatggcgacagccccgcccccctcccaccccagggtatgctg
gtccagcctgagatgcacctcccccacccaggccatccaggacacccaggtctacacccc
caccagtcgagtggccccatgcccaacccagctctctacgctcctccccccgtctccatg
tcccctgggcagccccctccacagcagctgctggccccgcccttctaccctccgccaggt
gtcatgacctttgggaacaccaactacccctacccggcaggagccaccctgccccccatg
tacaacccgccggcccagtcgcaggtgtacggtggggtgacgtactacgatccaatgcag
cagcaagcccagcccaaaccctcgcctccccggcgctcctcccagcccgtcaccgtcaaa
cctcccccaccagaggtagggtacggcccggagtga
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