Oncorhynchus keta (chum salmon): 118385015
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Entry
118385015 CDS
T09424
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118385015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118385015
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118385015
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
HNH_repeat
Motif
Other DBs
NCBI-GeneID:
118385015
NCBI-ProteinID:
XP_035627681
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Position
6:14651213..14667702
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AA seq
534 aa
AA seq
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MATELTISESAVPLSEPHQVEDEEHWLYGGENTKKQNAPEGLPGPGDSLQLTSMGNTLQL
TSMGNTEEKDAASQEAKGTEGEEEDSDSDDEDDVKVTIGNIKTGAPSYMGTGMNLSLKPA
RCYASAAAIKLQPKGIDIETLGAFNGAPVAEVEMDIFEDKPWRKPGADLSDYFNYGFNEE
TWKGYCERQRRLQLGLEPSAPLSFENKITVQQGRATTLEKDTEPSSIKPDYKPDFPPASV
LALAANRLKAGPPPNRKLGGTIDVIGGQTGAIRRVEGRRREMQEQNPIQVLGDHGNKVQP
LVPPAGPPLPLPMGMPPPHFLHPPPPVSGMPPPLHPPGMPPPSITGLFLPPLAPPPTLMM
PPVDSSRAPLPFGYNSGESSFISYPPVSSSHMPWGSVLEKGGEDRGRGHWEYQGSHSERD
RDQERGHTPTTSEYNEDDRYHYYSHDRESEREFEHSYLHVHDSSGGRSREREEHQRDRRH
RDKEESGKHKSSKRKQHDDEGEGHRRHKHKKSKRSKEDKDVPEDMLGRGEEHKD
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggctactgagttgaccatttcagaatcagcagtcccgttgagtgagccccatcaggtt
gaagacgaagagcattggctgtatgggggggaaaacaccaagaaacaaaatgcccccgag
ggtttgcctgggcctggtgactcccttcagctgacttcaatgggcaatacccttcagctg
acttcaatgggcaataccgaagagaaggatgctgcatcacaggaagccaaaggtactgaa
ggtgaagaggaggacagtgacagtgatgacgaggatgacgtcaaggtcaccattggtaac
atcaaaactggtgcaccttcctacatgggaacgggcatgaacctgagcttgaaaccagct
cgttgctatgcctcagcagcagccattaagctgcagcccaaagggatagatatagagaca
ctaggggccttcaatggtgcaccagttgcggaggtggaaatggacatctttgaggacaaa
ccatggagaaagccaggtgccgacctctcagactacttcaactatggttttaatgaggaa
acgtggaagggatactgtgagagacagcgcagactacagcttggcctggagcccagtgct
cctctcagttttgaaaacaagataacagttcagcagggaagggcaaccactttagaaaag
gatacagaaccgtcttctatcaagcctgattacaagccagactttccccctgcttcagtc
ttggccctcgctgccaacagactgaaggcaggacccccacctaacaggaaattgggtgga
actattgatgtgattggtggacagacaggagccattcgccgggttgaaggccgaaggagg
gaaatgcaggaacagaatcctatccaggtgctcggagaccatggtaacaaggtacaaccc
ttggttccaccagcaggacctcctcttcctcttccaatgggtatgcccccaccacacttc
ctgcatcctcctccaccagtatctggtatgcccccacctcttcaccccccaggtatgccc
ccaccttccattacaggcctgtttctacctccccttgctcctccccctaccttgatgatg
ccacctgtggatagcagtagagcccctcttccttttggatacaacagtggagagtcaagc
ttcattagctaccctccagtctcatcatcacacatgccttggggctctgtgctggagaag
gggggggaagacagaggacgagggcattgggagtaccaaggaagtcatagtgaaagagac
agagatcaagagagaggtcatactccaaccaccagcgaatataatgaggatgaccgttac
cactactacagccatgatcgagagagtgagcgagaatttgagcacagttaccttcatgtt
cacgacagcagcggtgggcgtagcagggagagggaggagcatcagcgagacagacgccat
cgtgacaaagaggagagtggtaaacacaagtcttccaaacgcaagcagcatgatgatgag
ggggaggggcatcgtagacacaagcacaagaaaagcaaacgcagcaaagaggacaaggat
gtcccagaggatatgttggggcgtggggaagagcacaaggactga
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