KEGG   Oncorhynchus keta (chum salmon): 118385113
Entry
118385113         CDS       T09424                                 
Name
(RefSeq) nuclear RNA export factor 1-like
  KO
K14284  nuclear RNA export factor
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03008  Ribosome biogenesis in eukaryotes
oke03013  Nucleocytoplasmic transport
oke03015  mRNA surveillance pathway
oke05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    118385113
   03015 mRNA surveillance pathway
    118385113
   03008 Ribosome biogenesis in eukaryotes
    118385113
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    118385113
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oke03019]
    118385113
   03009 Ribosome biogenesis [BR:oke03009]
    118385113
Messenger RNA biogenesis [BR:oke03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     118385113
   mRNA cycle factors
    Stress granule specific factors
     118385113
Ribosome biogenesis [BR:oke03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    118385113
SSDB
Motif
Pfam: LRR_NXF1-5 NXF_NTF2 Tap-RNA_bind TAP_C NTF2 UBA_8 RRM_NXF1-2 LRR_8 LRR_4 LRR_9 LRR_SKP2
Other DBs
NCBI-GeneID: 118385113
NCBI-ProteinID: XP_035627867
LinkDB
Position
6:complement(17727455..17749145)
AA seq 633 aa
MSTADDSRYYNDHDDRVGGQKVRNRKGRGPFRAPMYSDQGPVGPRPRHRGSQRGGGGGPG
PRARFDDEDGDVAMADSNSQDGSSQHRFNPYGRPNRRGDDRFDRGRRGGGGGHRGRGNNK
GGDGGGGGRKNWFKMSVPYGKKYDKDWLITALQNICSMPFTPVHYHVEGNRAEFFIDDST
TANALFKVSRKITDKEGYKVTVLMNPCPPPSFLQSELKPADLEHLKQCMAKRFDRPQQAL
DLNNIRIDPDLVSQNIDVTLNRKNSMRAVIKIIEENIPELVCLNLSNNKLFRLDDLSELV
NKVPNLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDQASYISEVRERFPR
LLKLDGQDLPPPIVFDVEVTPAALPPCKPSYFCSEEIKTPIVGFLQQYYSVYDSGDRQPL
LDAYHDGATFSLSMPFTMQNPSRCSLGDYHKDSRNLKKLKDPTTRFRLLKHTRLNVVAFL
SELPKTQHDTASLIVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFCRVFVTVPAGGTS
LCIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLSAFSLKSGMNLEWSQ
KCLQDNEWDFNRAGQVFTDLKARGKIPDVAFIK
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgtcaacagccgacgattcacgttactacaacgatcacgatgaccgagttggaggacaa
aaggttcgcaaccgtaaaggcagagggcctttcagggcccctatgtatagtgaccagggg
ccagtagggccaagaccaagacatcgtggtagccaaagaggcggcggcggcggcccggga
cccagagcgagattcgatgatgaggatggagatgtggcaatggcggacagcaactcccaa
gatggatcctcccaacacagatttaacccttatggaaggccaaatcggcgtggtgacgac
cgatttgaccggggccgcagaggtggtggaggaggtcacaggggtcgtgggaataacaaa
ggaggggatggaggtggaggtggccgcaagaactggttcaagatgtctgtcccctatgga
aagaaatacgacaaagactggctgataacagcactgcagaatatctgctccatgcccttc
accccagtacattaccacgtagagggaaaccgagcagagttctttattgatgattccacg
actgcgaatgccttgtttaaggtatcacggaagatcacagacaaagagggctacaaggtg
actgtactgatgaatccctgtcctccaccctcctttcttcagtctgaactaaagccagct
gatctggagcacctgaagcaatgcatggctaaacgctttgatcgccctcaacaagcgctg
gacttgaacaacatccggatagacccagacctggtgtcccagaacattgatgtgactttg
aacagaaagaactccatgcgtgctgttattaagataattgaggagaatattccagagctt
gtttgtctgaaccttagcaacaacaagctatttaggctggatgacctgtcagagctggtc
aacaaggttcccaacctgaagacactcaacctttctcataacgagttaaagacagagcgc
gagctggacaggatcaagggtcttaagctggtggagttatggctggagaggaaccccctt
tgtgactatttcaaggaccaggcttcatacatcagcgaggtgagagagaggttccccagg
cttctcaaactggacggtcaggatctcccaccgcccatagtctttgatgtggaggtgact
cctgccgcccttccaccttgcaagcccagctacttctgctctgaagagatcaagactccc
atcgttggcttcctacaacaatactacagtgtgtatgactccggagacagacagcctttg
ttagatgcctaccacgatggagcaaccttctccttgagcatgcccttcaccatgcagaac
ccctccaggtgcagtcttggagattaccataaagacagtcgcaacctgaaaaagctcaag
gatcccaccacacgattccgcttactgaagcacactcgtctgaatgtggtggctttcctg
agcgaactgcccaaaacgcagcatgacactgcatctctaattgtggacgtcaacaccttc
accaacacattactgtcgttcacggtcactggagtgttcaaagaagttgaaggtaaatcc
cgcgactctgtgagagctttctgtcgggtgtttgtcacagtgccagctggagggacaagt
ctttgcatagtgaatgacgagctgtttgtgcgcaatgctacgactgaggagatccgccgg
gcctttgtggcacctgcccccaccccatccagcagtcctgtccccaccctctcagccccc
cagcaagagatgctctctgccttctcactaaagtccggcatgaatcttgaatggtcccag
aagtgcctacaggacaatgagtgggatttcaaccgagcagggcaggtcttcacagacctc
aaggctcgtggaaagatcccagatgtcgctttcataaagtga

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