Oncorhynchus keta (chum salmon): 118385174
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Entry
118385174 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118385174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118385174
03019 Messenger RNA biogenesis [BR:
oke03019
]
118385174
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
118385174
RNA polymerase I system
118385174
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
118385174
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
RimP_C
DUF3912
Ribonuc_P_40
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
118385174
NCBI-ProteinID:
XP_035627973
LinkDB
All DBs
Position
1:40565185..40592645
Genome browser
AA seq
1086 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEYDEEEEE
DDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKAEEAEVSNIDHVVLDEDN
SGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAIALMRKCIAYQFTDTPLQIKSVVAPEHVKGYIYVESYKQTHVKAAID
XIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQ
NTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPAQRLFDAEKIRSLGGDVSHDGDFMI
FEANRYSRKGFLFKSFAMSAVITEGVKPTLSELDKFEDQPEGIDLEVVTETAGKEREHNL
QAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKL
IAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMDGKVLTVRHQAVNRRKDNRFVVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFTVG
GFAPRSPSISSPKHPGGGGGGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISHGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKSHGGMTSTHGRTPMYGPQTPMYGT
GSRTPMYNSQTPLHDASRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDDFEFGY
DDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYTAPSPQG
SYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSNIDQTSCDWVTTDILVHVKDTFLDSQVVNQTGVIRSVTGGMCSVFLQDTE
KVVSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRF
LGKLEL
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaagacagcgacttctctgacaaccagagtgaacaaagtagcgaagcc
gaggaggtggataaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgac
aaggcagcagaagaggaaggggaagacttggcagatgagtatgacgaagaggaggaagag
gatgatgatgaccgtcccagaaagaaacccaggcatggaggtttcatcttagatgaagcc
gatgtggatgatgagtatgaagatgaagacccgtgggaggaaggtgctgaggatatttta
gagaaagcagaggaagcggaggtgtccaacattgaccatgtggtcctggatgaggacaac
tctggctcccgcaggctgcagaacctctggagagattccagagaagaggccttgggtgaa
tattacatgaggaaatatgccaagcaatcaggaaatgattttcctgggggttctgaggaa
ctgtctgatgacatcacccagcagcagctgctccctggcgtcaaggatcctaatctttgg
acggtcaagtgtaagattggagaagagagagcaaccgccatcgcattgatgaggaaatgc
attgcctatcaattcacagacacgcccctccaaatcaagtcggtagtggctcccgaacat
gtcaaaggttacatctatgtggagtcgtacaagcagactcacgtcaaggctgcaattgat
tgaataggcaacctgaggatgggcttctggaaccagcagatggttcccatcaaggagatg
acagacgtcctcaaggtggtcaaagaggtgactaacctcaagcccaagtcctgggtccgc
ctcaagagaggcctctacaaagatgacattgcccaggtggactatgtggagcccagtcag
aacacgatatcactgaagatgattcccaggatagatttggacagaattaaggcccgtatg
agcatgaaagactggtttgcaaagcggaagaagttcaagagaccagcccagagactcttc
gatgcggaaaagatcaggtcacttggtggggatgtcagccacgatggagacttcatgata
tttgaagctaaccgctacagccgtaaagggttcctcttcaagagctttgccatgtctgct
gtgatcactgaaggagtgaaacccactctgtcagagctggataagtttgaggatcagcca
gaaggcattgatctggaggtggtgactgaaaccgcaggtaaagagcgtgagcacaacctc
caggctggggacaacgtggaggtgtgtgaaggggagctgatcaacttgcagggcaagatc
ctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggacctgaaggatccg
ctggagttcccggcccatgaattgaggaagtacttccgtatgggtgaccacgtcaagttg
atagcaggccgctacgagggcgacaccggcctcatcgtacgcgtggaggagaactttgtc
atcctcttctctgacctcaccatgcacgagttgaaggtcctgccccgggacttacagctg
tgctctgagacggcgtcaggggtagatgctgggggccagcacgaatggggagagctggtc
caactggacccccagaccgtgggagtcattgtcaggctggagagagagacattccaggtc
ctcaacatggacggcaaggtgctgacggtgcgtcaccaggcagtgaatcggcggaaagac
aaccgctttgttgtggcactggactctgagcagaacaacattcacgtgaaagacatcgtc
aaggtcatcgacgggccacactcggggcgtgagggagagatccgccacattttccgaggc
tttgccttcctgcactgtaaaaagctggtggagaacgggggcatgttcgtctgcaagaca
cgccacgtggtgctggccgggggctccaagcccagagacgtcaccaacttcaccgtggga
ggcttcgctccgaggagtccaagtatcagcagccccaagcatccaggtggtggtggtggt
ggtggtcagcagcagaggggtggtggaggaggtggacagatggggcgtggccggggcagg
agggacaacgacctgattggacagaccgtccgcatctcccatggaccatacaaggggtac
attggtgtggtgaaggatgccactgagtcgacagccagagtggagctgcactcaacatgc
cagaccatctctgtggaccgacagcgtctcaccacaatgggagccaagagccatggagga
atgacttccacccacggacgcactcccatgtacggtccccagacccccatgtacgggaca
ggctcccgtacccccatgtataactctcagacccccttacacgatgccagccgtacaccg
cactacggctcgcagaccccgctgcatgatgggagcagaacgccggggcagagcggagcg
tgggaccccaacaaccccaacacaccgtccagggcggacgatgactttgagtttggttat
gatgacgagccctcgccgtcccctcagggctacgggggcacgcctaacccccagacccct
ggctacccagaggtgccctcaccccaggtcaatccccagtacaacccccagaccccaggc
accccagccatgtacaacacggaacagtactcgccgtacactgccccctccccacagggc
tcgtaccagcccagccccagtccccagagctaccatcaggtggcccccagcccagtgggc
taccagaacacacactcaccagccagctaccaccccacaccctcacccatggcataccag
gccagtccgagccccagcccggtaggctacagccccatgacccccggcgccccctcccct
ggcggctacaacccccacacccccggctccaacatcgaccagacctcctgcgactgggtc
accaccgacatcctagtgcacgttaaggacaccttcctggacagccaggtggttaaccag
acgggcgtcatccgcagtgtcacgggtggcatgtgctcagtcttcctccaggacacagag
aaggtggtgagcatctccagtgaacacctagagcctgtcaccccaactaagaacaacaag
gtgaaggtgattttaggggaggaccgcgaggccacggggatcctactgagtattgatggg
gacgacggcatcgtcaggatggagctggatgaccagctgaagattctcaacctccgcttc
ctgggcaagctggagctctga
DBGET
integrated database retrieval system
