Oncorhynchus keta (chum salmon): 118385297
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Entry
118385297 CDS
T09424
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118385297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118385297
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
118385297
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
118385297
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
EXOSC1
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
118385297
NCBI-ProteinID:
XP_035628216
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All DBs
Position
6:26570689..26574572
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AA seq
306 aa
AA seq
DB search
MRRLNLQKTENMAADMRLPTFRKQVSLSPSLSALDGKDLVVPGDVITSDTGFMRGHGTYM
DEEKLTASVAGEVERVNKLVCVRPLRTRFNGEVGDVVVGRITEVQQKRWKVETNSRLDSV
LLLSSVNLPGGELRRRSAEDELTMRDYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLG
QGVLVQLSPSLIKRQKTHFHNLPCGASIILGNNGFVWLYPAPGQQDEEAGGYYTSLEPVS
LSDREVISRLRNCLLALGAHKVLLYDTSVLYCYESSLPHQIKDILKPEVMEEIVMVTRQK
LVEQEG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgtttaaatttacagaagacagaaaacatggctgcggacatgagattaccaact
tttcggaaacaagtatcgttatcaccctccctgtccgctttggatgggaaagatctcgtt
gtgcccggtgatgtgattacatcagatacagggtttatgaggggtcatgggacttacatg
gatgaagaaaaactaacagcctctgtggcaggagaggtggagagggtgaataagcttgtc
tgtgtacggccgctcaggaccaggttcaatggggaggttggagatgtggtggtcggaagg
atcacagaggtgcaacagaagcgctggaaggtggagaccaactccagactggactctgtg
ttgttgctgtcttctgtcaatctgcccggaggagagctgaggagacggtcagcagaagat
gagctcaccatgagagactaccttcaggagggggacctcatcagtgcagaggtacagtct
gttttctcagatggagcactctctcttcacacccgcagtttaaagtacggaaagctgggg
caaggagttcttgtgcagctatctccctctctcatcaagagacagaaaacccacttccac
aacctgccgtgtggggcctccatcatcctgggcaacaatggctttgtgtggctgtaccct
gccccaggacagcaggacgaggaggctggaggatactacaccagtctggagccggtctct
ctctctgatcgggaggtgatctcgcggttaaggaactgcttgctggccttgggggcacac
aaggtgctgctgtatgacaccagtgtgctttactgttacgagtcatcactcccacaccag
atcaaggatatcttaaaaccggaggtgatggaggagattgtgatggtgacgcgtcagaaa
ctggtggaacaggagggttaa
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integrated database retrieval system
