Oncorhynchus keta (chum salmon): 118385301
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Entry
118385301 CDS
T09424
Symbol
ddx54
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oke03009
]
118385301 (ddx54)
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118385301 (ddx54)
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
Pre-60S particles
Helicases
118385301 (ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
P-loop_SecA
DNA_pol3_chi
Motif
Other DBs
NCBI-GeneID:
118385301
NCBI-ProteinID:
XP_052377163
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Position
6:26672201..26682758
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AA seq
875 aa
AA seq
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MAQRKKKLTKKKRQTGHREPDESDGGDFEVAATIRDDDSPGRKLPRFPGASAECLSDVEP
DTRELVRAQNKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILDGKDMVAM
ARTGSGKTAAFLVPMFEKLKVPQAQTGARALILTPTRELALQTMKFTKELGKFTGLKTAL
ILGGDSXCLVTAALHENPDIIIGTPGRLMHVVMEMNLKLQSVEYVVFDEADRLFEMGFAD
QLQEIIRRLPDNRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSELLKLSFFHLR
MDDKPALLLHLLRNVAKPQEQTVVFVATKHHVEYLKELLSSEGVECAYIYSALDQTARKI
NIGKFVHRKAMVLIVTDVAARGIDIPLLDNVINYNFPSKAKLFLHRVGRVARAGRGGAAY
SLVCTDEIPFVYDLHLFLGRPLQLATPDHQQESDGVFGRVPQSILDDEESQLVTAHENSH
DLQNLRRIADNAYKQYIKSRPMPSPESFKRVKNTELPSMAVHPLLGSGLEKMELERLQMV
DCIKGYKARATIFEINSNSKTNASVVMRAKRSRDTRLVDMFTQKKEVLAAEGRYHVPVTP
LPSTHHTADQEDSEEEDFQGVFSEVVGGKRRKPQEDGDMERPDSKKTKQTGRDEENYIPY
RPKDFNSERGLSLGKEGTTFEQQASTAVLDLMGDEGDRLNQHKHMMKWDRKRKRFVKETG
KEADQKKKKRTESGQMINNKNKKNFYEEWKKKYKVDDGGGGDSDGETGGGGRGRRGGGGG
RGRPGRGRGGPSRGPNSQPLGPPGKQRDGGSRGPRSELKTRDQILKQRRKTEKQKFLQSG
GLKKLRGKGKQRLNDQKKSGFGRGVHKKGKMKKRL
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaagaaagaagaagctaactaagaaaaagagacagactggccaccgggagcct
gacgagtcggatggtggagatttcgaagttgctgctacaattagggacgatgattctcct
ggaagaaagttaccccggttccccggtgcttcggcagagtgtctgtctgatgttgaacca
gacacccgggagctggtcagagctcagaacaagaagaaaaagaagtctgggggcttccag
tccatgggtctcagttacccagtttttaaaggagtcatgaagaagggctacaaagtccct
actccaatccagaggaagactatcccagtgattctagatggcaaggacatggttgccatg
gcaaggacaggcagcgggaagactgctgcgttcttggtgcccatgtttgagaagctgaag
gttccccaggcccagacgggggccagggctctaattttgacccccaccagagagttggcg
ctgcaaaccatgaagttcaccaaagagttgggaaaattcaccggccttaagacagctttg
atccttggtggagacagttgatgtctagtcactgctgcgcttcatgagaaccccgatata
attattggtaccccaggtcgtctgatgcacgttgtcatggagatgaacttgaagcttcag
agcgtggagtacgttgtgtttgacgaggcggacaggctgtttgagatgggctttgctgac
cagctccaggagatcatccggaggctcccagacaacagacagacactgctgttctctgcc
accctgcccaaactactggttgagtttgctagagccgggttgacggagcccgtgctgatt
cgtctggacgtggactccaagctgagtgagctgctgaagctgtcgttcttccacctgagg
atggatgataagccggctctgctgctccacctgctgaggaacgtggcaaagccacaggag
cagacggtggtatttgttgccaccaaacaccatgtcgagtacctcaaagagctgctgtcc
tctgagggcgtggagtgtgcctacatctacagtgccctggaccagactgccaggaagatc
aacattggtaaatttgtccaccgcaaggccatggtgttgattgtgacagacgtagctgct
cgcggtatagacatccccctactggacaacgtcatcaactacaacttcccctccaaggcc
aagctcttcctgcacagagtcggtcgagtggcacgcgcaggccgcggtggagcagcctat
agccttgtgtgtacagatgagataccttttgtctatgacctccatctcttcctggggaga
ccccttcagctggctacacctgaccaccaacaagagtcagacggtgtgtttggtcgtgtt
ccccagagcatcctggatgatgaggaatcccagctggtcacggcccatgagaactctcat
gacctgcagaacctgcgccgcatagcggacaacgcctacaagcagtacatcaagtcccgg
cccatgccctcgccagagtcctttaaacgggtcaagaacacagagctccccagcatggct
gtccacccactgttagggtcaggcttggagaaaatggaactggaacgccttcaaatggtg
gactgcattaagggctacaaggctagagctacgatctttgagatcaactcgaacagcaag
accaatgccagcgtggtgatgcgagccaagcgctccagggacacgcggctggtggatatg
ttcacacagaagaaggaggttctggctgcagagggcaggtatcacgttcctgtcactccc
ctgccctccactcaccacacagcagaccaggaggacagtgaagaggaggactttcagggt
gtgttctctgaggtggtgggggggaagaggaggaagccacaggaggatggcgatatggag
aggccagacagcaagaagaccaaacagactggccgcgatgaggagaactacatcccttac
agacccaaggacttcaactctgagagaggactgagcctgggaaaagagggcacaacgttt
gagcagcaggcttctactgctgtactggacctgatgggagacgaaggagacagactcaac
cagcacaaacacatgatgaagtgggatcgtaagagaaagcgcttcgtcaaagaaacggga
aaggaggcagaccagaagaagaagaagagaacggagagcggacagatgatcaacaacaag
aacaagaagaacttctatgaggagtggaagaagaagtacaaggtggacgacggagggggt
ggagattcggatggagagaccggaggtggaggcagaggaaggaggggtggaggaggtggc
cgaggccggcctggccggggccgaggtggcccatccaggggccccaactcccagcccctg
gggccccctgggaagcagagggatggtggctcccggggcccgcgctcggagctgaagacc
cgggaccagatcctgaagcagcgcaggaagacagagaaacagaagttcctgcagagtgga
ggcttgaagaagctccggggcaagggcaagcagcgcctcaacgaccagaagaagtctggc
tttggccgtggtgtccacaagaagggcaagatgaagaagagactgtga
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