Oncorhynchus keta (chum salmon): 118385863
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Entry
118385863 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oke04147
]
118385863
00535 Proteoglycans [BR:
oke00535
]
118385863
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118385863
Exosome [BR:
oke04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118385863
Proteoglycans [BR:
oke00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118385863
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118385863
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF1554
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
118385863
NCBI-ProteinID:
XP_052377815
LinkDB
All DBs
Position
7:1940726..2027317
Genome browser
AA seq
1598 aa
AA seq
DB search
MWDSQEGTVLPTDLIGLAENVNVLAGKENEMLGIVKVDLAESVLDEHNRTAEWNGTVFPI
DSQPVPSVNVSLETTPSNRSSNRVIDSSSSWNANNFNSTEYSDEYTVSGDFLTPFDSNHS
LLATSETPAPDSPRCWPIDFHLPFCKSMGGDSFVLPNYFNHSSVKEVRAVLGSWAWLLRT
RCHHSLEWFFCLLLLPRCPRGLPPPLPCRSVCEVLQDSCWTVLDEGSLPMECHSLPDEDD
GYQCLSVSNQKDEIGVSLLQLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLARAHLPS
PFYRDFSLLFNLKPQSTKGGVIFSVTDASQKIMYVSVKLSPVKANKQNVIFYYTEPDSQV
SYVAATFPVHNLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMELEAGAGVFV
GQAGGADPDKFLGVIGELRVVGNPRAAERQCEEEGDDSDASGDGGSSGNGLPSSPLQITT
PPSSRPIQQPPVTRQQPDXRSPLIRREPSQQRVARGERGEKGDRGEKGDRGPIGPKGDSG
SESGTRGGARGEKGVLGEKGMKGKAGFGYPGSKGDPGPAGPPGPPGSPGPAAEVVSRGDS
SVIQTVAGPRGPAGTPGPAGPEGPAGADGEPGDPGEDGSQGLVGPPGFPGTPGDSGLKGE
KGDRGEGQPGPSGPPGPPGLPAPSSHDRPTFVDMEGSGFPDLEALRGLPGLPGPPGLPGA
PGPAVVGTGLSSSFGPQGPPGQDGAPGQPGLPGPPGTDGRPAVAGARGEKGDPGELGLPG
AVGAKGAQGLTGIPGQPGLGGLAGLPGPMGPVGQPGPPGPPGPSYHAGFDDMEGSGVGVA
NGVPGTRGPDGRQGTTGIPGLPGKPGFPGPPGEMGNEGLQGRDGRPGLDGFPGPNGQKGD
RGERGETGRDGNGQPGPPGPPGPPGQIIYQTSSSYDAVVGGAGPQGETGLPGQAGFPGPI
GSKGDKGDPGQPGYGVKGEKGEPGLIIGPDGSPLYLRELSGEKGDRGPAGPVGPPGQYGP
SGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFGYPGVPGPPGPPGPPGPAVPVDRFNG
YDASRNYRATKGEKGDHGAQGLPGTPGVASNLDIFAFKNDLKGERGDSGVKGEKGEPSGG
YDDPRFRGQQGPPGPPGNPGLMGPKGDSIMGLPGPQGPPGSPGIGYDGRPGIPGPPGPPG
PPGSPSQPGAYRPNHSINIPGPPGPAGPPGTPGHTSGVTVLRSYDTMIATARRQSEGTLI
YIVDKTDLYIRVRNGFKQVLLGDYSPFYRDLDNEVAAVQPPPVVNYPQSQDHSANNGAEH
FSQGGTATHPIKPPPHKPVEIPRPARPDNRNPDPRYPPQYDPRYPPQTDARYPPQTDGRY
SHVQPENRYPNQPESRFPVTPQRRPVPLPVPQPGGHLHTSGPGLHLIALNMPQVGNMRGI
RGSDFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSIPIINLKDQVLFNSWESM
FSKTGVRMKENAPIYSFDGRDILRDSAWPEKMVWHGSSNEGHRQTDNYCETWRAGDREVT
GLASSLQTGQLLQQLPSSCSSSYIVLCIENSSLSHSQK
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atgtgggatagccaggagggaacagttttacccacagacctcatcggtttagcagagaat
gtcaatgtgcttgcagggaaagagaatgagatgctgggtattgtcaaggtggacctagca
gaaagtgttttggatgagcacaacagaacagctgagtggaatggtacggttttccccata
gacagtcagcccgtcccaagtgttaatgtctctcttgagacaactcccagtaacagaagt
agcaacagagtaattgacagtagctctagttggaacgccaataattttaactcgacagag
tattctgatgaatacactgtctcaggtgattttctaaccccttttgacagcaaccactct
ctcttagctactagtgagacgccagccccagactccccacgttgctggccaatagatttc
catttgcctttctgcaaatccatgggtggcgacagctttgtgttgcccaactatttcaat
cacagcagtgtgaaggaggtccgggctgttttgggctcttgggcgtggctcttgaggacg
cgctgccaccatagcctggagtggtttttctgcctgctgctgttgcccaggtgcccccgg
ggcctgccaccgcctttgccttgccgcagcgtctgcgaggtcctgcaggacagctgctgg
acagtcctcgatgagggcagcctccctatggagtgccactctttgcctgatgaggacgat
gggtatcagtgcttgtcagtcagtaaccagaaagatgagatcggtgtctccctcctgcaa
ctgatcggggaccctcccccagacgagatcaccaagatctatggtcccgacaacagcccc
ggctacgtcttcggtcccgacgccaacacgggccagttggcacgtgcccatcttcccagc
cccttctaccgggacttctccctcctcttcaacctgaagccccagtccaccaagggcgga
gtcatcttttcggtcacagacgcctcgcagaagatcatgtatgtgagcgtcaagctgtcg
ccggtcaaggcgaacaagcagaatgtcatcttctactacacggagcccgactcgcaggtg
tcgtacgtggcggccaccttccccgtgcacaacctggccgaccagtggaatcgcttctcc
atctctgtgctggacgacaaggtcaccttctacatcaactgcgacgaccaaccccaggtg
gtacgcttcgagaggtccccggatgagatggagctggaggccggagccggggtgttcgtg
ggccaagccggaggggccgatcccgataagttcctgggggtgattggggagctgagggtt
gttggaaacccccgggctgctgaaagacagtgtgaggaggaaggggacgactcggatgct
tcaggagatggcggaagctctggaaatggcctcccctcttcccctctgcagattactacc
cctccgtcatcacgcccgattcagcagcccccagtgaccaggcaacaaccagattagcgt
tctcctctcatccgcagggagcccagccaacagcgagttgcaaggggagaaagaggagag
aagggtgacagaggagagaaaggagacaggggtcccatcggtccaaagggagattctggg
tctgagtcgggcacacgaggaggggcacgtggagagaagggagtgcttggagaaaagggt
atgaagggaaaagcaggcttcggataccctgggtcgaagggcgaccccggccccgctggt
ccccccggaccaccaggctccccggggcccgcggctgaggtggtatcacgtggcgacagc
tccgtgattcagacggttgcgggtcccagaggaccagctggaactccgggacctgcaggc
cctgaggggcccgcaggagccgacggagagcctggtgatcctggtgaagatggttctcaa
ggccttgttggaccgccaggcttccctggaaccccaggagactctgggctcaaaggagag
aagggtgaccgtggtgagggccagccgggccccagtggacctcccggacccccaggactc
ccagcgccatccagtcacgaccggcccacctttgtggacatggaaggctctgggttccct
gacttggaggctcttcggggactgcctggtttgcctggccctcctggactccccggggcc
ccaggtcctgccgttgttggtacagggctctcgagctcgtttggcccccaaggtcctcca
ggacaagatggtgcccctggtcaaccggggttacccggcccacctggtacagatggtcgc
ccagcagttgcaggggccaggggagagaagggtgacccaggtgaactcggtcttccggga
gcagtcggcgcaaagggcgcacagggattgactggtatccctggtcagccaggactgggc
ggattggctggccttcctggaccaatgggaccagtgggacaacccgggccaccaggaccc
cccggaccaagctatcacgctggctttgatgacatggaaggctctggtgtgggagtggcc
aatggggttcctggaacccgagggccagacggacgacagggtactactggcatccctggc
ctaccgggaaagcctggtttccctggtcctcctggcgagatgggaaatgaaggactacaa
ggaagagatggccgaccagggttggacggtttccctggacctaatggacaaaagggggac
agaggagaaagaggcgaaactggtcgcgatggaaatggacagcctggaccaccaggccca
cccggcccaccaggacaaataatctaccagacctccagcagctatgatgctgtcgttgga
ggagctgggccccagggtgaaactggtctacctggccaagctggattccctggtcctatt
ggatcaaagggcgacaagggagacccaggacagcccggttatggagtcaagggcgagaag
ggcgagcctggcttaatcattgggcctgatgggagtcctttgtacctgcgagaattgtcg
ggtgagaagggagacagaggacctgccggacccgtcgggcctcctgggcagtatggacct
tctgggataaagggtgaatttggaatgcctggaagacctggtcgtcctggtgtaaacgga
tacaagggtgaaaaaggagagccatccacaggtgccggatttggctacccaggtgtccca
ggcccacccggacccccaggaccacccggaccagctgtgcctgtggaccgcttcaacgga
tatgacgcctcaaggaattatcgagcgacaaagggggagaaaggtgatcacggagctcaa
ggtctcccaggaacgccaggtgtggcctctaacttagacatattcgcattcaagaatgac
ctgaaaggagagcgcggggattctggcgtgaagggggagaagggagagccaagtggtggc
tatgatgacccccgttttagaggacaacaaggcccaccaggaccccctggaaacccagga
cttatgggtccaaagggagattcaatcatgggcctccctggtccccagggcccaccaggc
tccccagggatcggctacgatggtcgtccaggaatcccaggcccaccaggtcctcccggg
cccccagggtccccctcacaaccaggggcctatagacctaaccactccatcaatattcct
ggcccccccggacctgctggaccacctggaactcctggtcacacgtcaggggtgacagtt
ttgaggtcatacgacacgatgattgctactgcaagacgccagtcggagggcaccctcatc
tacattgtcgacaaaacagatctctacattcgagtccgcaatggattcaaacaagtcctg
ctcggtgactacagtcccttctacagagatctggacaatgaagtagcggctgtccagccc
ccccctgtcgtcaactacccccagtcccaggatcactcggccaacaatggagctgaacac
ttctcccaaggcggtactgccacccaccccatcaagcctcctcctcacaagccggtggag
atccccaggcctgccagacccgacaaccgcaaccccgaccccagatatccccctcagtac
gaccccagatacccccctcagactgacgctaggtacccccctcagacagatggccgctac
agccatgtgcagcctgagaacaggtatcccaaccagcccgaaagccgattcccagtcacc
ccccagagaagacccgttccccttcctgttccccagcctggcggtcacttgcatacatca
gggccaggactccacctgatcgccctgaacatgccccaagtgggcaacatgcggggcatt
cgtgggtcagacttcctgtgtttccagcaggctcgtgctgtgggcctgaagggcaccttc
agggctttcttgtcctccaagctccaggacctctacagcattgttcgcaagtccgacaga
gacagcatccccatcataaacctgaaggaccaagtgctgtttaatagctgggagtctatg
ttcagtaagactggggtcaggatgaaggaaaatgcaccaatctactcctttgatggcaga
gatatccttagggacagtgcatggcctgaaaaaatggtctggcacggctctagcaacgag
ggtcaccgccagactgacaactactgcgagacatggagggccggagaccgcgaggtgaca
ggcctagcgtcctcactgcagaccggccagctcctacaacagttgcccagcagttgctct
agctcctacatagtgctgtgtatcgagaacagctctctctcacactcccaaaaataa
DBGET
integrated database retrieval system
