Oncorhynchus keta (chum salmon): 118385878
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Entry
118385878 CDS
T09424
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118385878
03015 mRNA surveillance pathway
118385878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118385878
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118385878
mRNA cycle factors
P-body specific factors
118385878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
118385878
NCBI-ProteinID:
XP_035628972
LinkDB
All DBs
Position
7:complement(3392734..3430465)
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AA seq
492 aa
AA seq
DB search
MRSETDQMTGGREESVVEIQFRDIPRGQDAVFVDSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRVYINFRNPEDILLFRDRFDGYVFIDNRGQ
EYPAVVEFAPFQKVSKKKLKKKDSKAGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTKKLIAKRTTPLLEYIKNKKLEKHRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKSDWDDDVDSDRLKDKGDSGDTERAKWDKPSGHMKSK
ETKDPGQMESDKEQREHGRRQRDKDHRGRDEERKRQRHHYEFDKSMRCKEDTNWGKGYCQ
DRAKKDGQYHSSYSYDTCDKVGKEAREDIGGSRKDRVRNKVSDKACVSQSVLTYQDRRMS
QSEGPHQIRGALPNKDRPAMQLYQPGAHNRKRVSSAMKGYELPMNRSPEHATADHCYEAV
AMETGSEKSGDE
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaacggaccaaatgaccgggggcagggaggaaagtgtcgtcgaaatacaa
ttcagagatattccgaggggacaggacgccgtcttcgtcgactcaaagcagaaagaagag
aagaaggaggtctttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctatgactactttgagtttttccctgct
gatcaaagcctctatccacacctgttctccagagtttacattaacttcagaaaccccgaa
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacagaggccag
gagtacccagctgtggtagagtttgccccctttcagaaagtctccaagaagaagctcaaa
aagaaagattccaaagctggaagcattgaagaagacccggagtaccggcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaaagaaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcacaggataagagaagagaagagagaggagcgtcgacgcagg
gagctggagaagaaacggcagagggaggaggaaaagaggaaacggagggaggaggagaga
cgcaaacgcaaggaggcggataaacagaagaaactatcggagaaggagatcaagatcaag
ctcctgaagaagagtgactgggacgatgatgtggactctgacaggctcaaggacaaagga
gacagtggggacacagagagggccaagtgggacaaacccagtggacacatgaagtcaaag
gaaaccaaggacccgggtcagatggagagcgataaggagcagagagagcacggccgcagg
cagagagacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactac
gagttcgacaagtccatgcggtgcaaggaggataccaattggggtaaaggctactgccag
gaccgggcaaagaaagatggccaataccacagctcctactcctatgacacgtgcgacaag
gtgggcaaggaggccagagaggacattggcggtagcaggaaggaccgcgtccggaacaag
gtgagcgacaaggcctgtgtctctcagtctgtgttaacctatcaggacagaaggatgtcc
cagtcagaggggccacaccagatacgaggggctctgccaaacaaggaccggcctgccatg
cagctctaccagccaggcgcacacaatcgcaagcgcgtgagctctgcgatgaaaggttat
gagcttcccatgaaccgctcgccagaacacgcgacggcggaccactgctacgaggccgtc
gccatggaaacgggctcggaaaagagcggagacgagtag
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