Oncorhynchus keta (chum salmon): 118385944
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Entry
118385944 CDS
T09424
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118385944 (pms1)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
118385944 (pms1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
DUF7080
Motif
Other DBs
NCBI-GeneID:
118385944
NCBI-ProteinID:
XP_035629097
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Position
7:complement(9363339..9429352)
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AA seq
915 aa
AA seq
DB search
MNRLPADTVRLLSSCQVINSVVNVVKELLENSLDAGALSIDIKLENYGFDRIEIRDNGSG
IKAADTAVMAVQHYTSKICSHDDLEHLATYGFRGEALGSICAVAEVGVTTKTSEDDVGTQ
YTLDLTGSVVSQKPSHLGQGTTVCALKLFKNLPVRRQYYANTKKCKEELKKVQDLLMAYA
IIKPELRLTLTHNKVVLWQKAKVSDHRMALMATLGPNAVAHLLPVHHQQPEIVIDGFFPR
PGMDCSLASSSNPDKTFIFVNDRPVHQKDILKVVRQHFLAQYPADSALNRYPTVMLNITV
PSSTVDVNLTPDKTQILLQNKVAVLAAVETLLVSFYGPGLGSATEATPVTTEYDGGSGLH
AGPSLGDCRGNAELEDSLAEHSVRMAKAPSDCSDGPLSRVVAGDQTADTSSSSSSEDWIV
NLNPGDFDLAFPQLEDYMASTGTGTTNPGTAKGLERLDNHDQGHDKGKDVEQLSAVSWSR
GTALTDPSTGEPLQPVKIHLATGWSSDLGQVKAKGQSSPGKKVSNAITEKRAALTAYDLI
NNRAMRTPLSPAALFERETRASVLQEKPTASLQDITTAVQERWKNLGEEDRKKYEDKAKK
HLELYDLQTKLASDRDVREPERRLCLVSPLSRPQGQKRKVLPSNQPVLDQLFFSQPQKKR
SPGPKPSQPLPPFSVVTLRQRLHRLSFQSNPRPQGLRLVNRLASQSAWVVLCGRKLMLLN
PFRVEEALLFKRLLENNILPAVSLQNPIQLTDSILGGAEYTQSLCTMEKGSPELRGMAIF
SDPRLVANGFQITLTPGSSSTERHLEVTAMADCVPFLGMEDLREILTAVLHRNAKTVQEC
RPLKVTNYLQGEAVRLARQLPVTLAKEDVENILLRMQQQLEETSQACIHGQAFFHHLSDI
PDTEQEALKIMSNIL
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggctgcctgcagacaccgtgaggcttctgtccagctgtcaggtcatcaactct
gtggtaaacgtggtgaaggagctgctggagaattccttggatgctggtgccttgagcatc
gacattaaactggagaattatggttttgatcgaatagaaatcagagacaatggctctggc
atcaaagctgctgatactgctgtgatggctgtgcaacactacacctctaagatctgcagc
cacgacgacctggagcacctggcaacatatggcttcagaggagaggccctgggctccatc
tgcgctgtggcagaggtaggtgtcacgacaaagacgtcagaggacgacgtcgggacccaa
tacacgcttgacctcacgggaagtgttgtttcccagaagccctctcacctagggcaaggt
accacagtctgtgcgctgaagctttttaagaatctcccagtgaggaggcagtactatgcc
aacacgaagaagtgcaaggaggagttgaagaaggtgcaggacctactcatggcctatgcc
attataaaaccagagctgagactcaccctcactcacaataaggtggtgttgtggcagaag
gccaaggtgtccgatcacaggatggctctcatggctacactggggcccaacgctgtggcc
cacctgctccccgtccaccatcaacaaccagagatcgtaattgatggattctttcccaga
cctggtatggattgctctttagcaagctccagtaaccccgacaaaacatttatctttgtg
aatgatcgacctgtccaccagaaggatatcctgaaggtggttcggcagcacttcctggct
cagtacccggcagactctgcccttaatcgttatcccactgtgatgctcaatatcactgtt
ccctcatccactgtagacgttaacctgacacccgacaagacccagattctgctccagaac
aaggtggctgtgctggctgcagtggagacgctgttggtttccttctatggccctgggttg
gggtctgccactgaggctacaccagtcactacagaatacgatggaggcagcggcctgcat
gctggcccatcactgggcgactgtaggggaaatgctgagttagaggacagtcttgcggag
cacagtgtcagaatggccaaagctccatctgactgcagtgatggccctctatccagggta
gtggctggtgaccagacagcagacactagctcctcctcttcctctgaagactggatagtt
aacctaaatccaggggactttgacctggcatttccacaattggaagattacatggcttcg
accggcaccgggacaacaaatccaggcacggccaaaggcctggagaggctcgacaaccac
gaccaaggtcatgacaaaggcaaagacgttgagcagttatcagcagtgagttggagccga
ggaacggctctgacagacccctccacaggcgagccgttgcagcccgtcaagatccacctg
gccaccggatggagcagtgaccttggccaggtcaaggccaagggtcagagcagccctggc
aaaaaggtgtccaacgctataacggagaaacgggcggcgctgacggcctacgacttgatc
aataaccgtgccatgaggacacccctgtcccctgccgccctgtttgagagggagacccgg
gcatcagttctccaggagaagcccacagccagcctccaggacatcaccactgccgtgcag
gagcgatggaaaaacctgggggaggaggaccgaaaaaagtatgaggataaggcaaagaaa
cacctggaactctatgacctccagaccaagctggcctctgatcgagatgtgagagagccc
gagaggcggctctgtctggtctccccgctgagtcggccccagggccagaaacgcaaggtc
ctgccttctaaccagccggtcctagaccagctcttcttttcccagccccagaaaaagagg
agccctgggccaaagccctcacagccactaccgccgttcagtgtggttaccctcaggcag
cggcttcatcgcctctcgttccagagcaacccaagacctcagggcctccggcttgtaaac
cgcttggcctctcaaagcgcctgggtcgttttatgtggtagaaagctcatgttgttaaat
ccatttcgggtggaggaggccttgctgtttaagagacttctggagaataatatacttcca
gcagtgagcctgcagaacccgatacagttaacagatagtatcctagggggtgctgagtat
actcagtctctctgtacaatggagaagggaagtcctgagctgagaggaatggccatcttc
tctgatcccaggcttgtggccaacgggtttcaaatcacactcactccagggtcctcgtcc
actgagagacatctggaagtgacagcgatggccgactgcgtgcctttcctcggtatggag
gacctcagggagatccttacagctgttctgcacaggaatgctaagaccgtacaggagtgc
cggccgctaaaagtcaccaactaccttcagggagaagctgttcgactggcccgtcagctg
cctgtgacccttgccaaagaggatgtagagaacatacttttgcggatgcaacagcagcta
gaggagaccagccaagcctgcatccatggacaagcctttttccaccacctttctgacatt
cctgacaccgaacaagaggcgctgaagatcatgtccaatattttgtag
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