Oncorhynchus keta (chum salmon): 118385972
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Entry
118385972 CDS
T09424
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118385972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118385972
Spliceosome [BR:
oke03041
]
Complex A
U1 snRNP components
U1 related factors
118385972
Complex B
118385972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
118385972
NCBI-ProteinID:
XP_035629152
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All DBs
Position
7:complement(10857563..10898723)
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AA seq
891 aa
AA seq
DB search
MSSDGNNGQSQAPPFAGVPTSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGQIPGMMPPMMPGMMMPPHMSAAAMQPTGPPGVDTTVTAAPGTVGTTNGTPQ
DDQPKKKSVWTEHKSMDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYKSDNGK
AYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAPCAVIAPTLQPDSAAVMATMMM
EMPVMMPITTVLEEQMSQVPMHVAEVSAEAPVNSTEEAVGMEASASNDASKDERPELVKK
TYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKV
QTEKEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPERDRLE
IYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQ
LHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKNFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEATFKSMLKQATPALEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSRSRSGSESDGEDDYHNKKKKRSQSKSPSE
RSSSGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKDKGRERDSKREKDQEKEKESDK
SRGKSRSDSKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggggtcccaacc
tcaggcatgccgccgccttttatgggaccaccgggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccacccggcatgatg
ccacctggcatgatgccaccgatgggacagataccaggcatgatgccacctatgatgccc
gggatgatgatgccccctcacatgtctgctgcggcgatgcagccaacaggaccgcctgga
gtggacacaactgtcactgctgcgcctgggacagttggtaccacaaatggcacgccacag
gatgaccaaccgaagaagaagtctgtgtggacagaacacaagtccatggatgggaagacc
tactactacaacaccgagaccaagcagtcttcctgggagaagcctgatgacttgaaatct
cctgcagaacaaatgctgtcaaaatgcccatggaaggagtataaatcagacaatggcaag
gcgtactactacaactcccagactaaggagtcccggtggaccaaacccaaagagcttgaa
gatctagaagccatgataaaagccgaggagaatgggacatcggaggtaggcgctccttgc
gctgtaatcgcccccacccttcagcctgacagtgctgctgtcatggcgaccatgatgatg
gaaatgccggtcatgatgccgattacaacagttttggaggaacagatgtcccaggtgccc
atgcatgtagcggaggtcagcgctgaggcgcctgtgaactccacagaagaagcggtcggc
atggaggcctcagccagtaatgacgcttcgaaggatgagaggccagagctggtgaagaaa
acgtacaagtggaacacgaaagaagaggccaagcaggcctttaaagagctcctgaaggag
aagggcgtttcatccaatgcatcttgggaacaagccatgaaaatgatcatcaatgaccca
cgctacagtgccctgcccaaattaagcgagaaaaagcaggccttcaatgcttacaaggtg
cagacagagaaagaggagaaggaggaggccagactcaaatacaaggagtccaaggaaacg
tatcagagatttttggagaatcacgagaaaatgacatctaccaccagatacaagaaagca
gagcagatgtttgcagagctggacgtgtggagcaccgtcccagagagagaccgactggag
atctatgaagatgtcctattctacctggccaagaaggagaaggagcaagccaagcagctg
aggaagaggaactgggaggcgctgaagaacatcctggacaacatggccaacgtgacctac
cgtaccacctggtccgaggcccagcagtacctgctggacaaccccaccttcgcagaggac
gaggagctccagaacatggacaaggaggatgctctgatttgtttcgaggagcacatccgc
gcgctggagaaggaggaggaggacgagaagcagaagactttgctgagggagaggaggaga
cagcgtaagaacagagagtccttccagaaattcctggacgagctccatgaccacggtcaa
ctccactccatgtctgcctggatggagatgtaccccaccgtcagctcagacatccgcttc
gccaacatgctgggccagccagtttatggtgtctattctgcaggctccactcccctcgat
ctgttcaagttctatgtggaagacctgaaggctcgctaccacgacgagaagaggatcatt
aaggatatcctgaaggacaaaaacttcctggtggaggtcaacactagctttgaagacttt
ggctctgtgatcagctcagacaagagagccatgacgctggacgcaggcaacatcaagctg
gccttcaacagtttgctggagaaggcagaggctcgggagagggagcgggagaaggaggag
gccaggaagatgaagaggaaagaggctacctttaagagcatgttgaagcaggccaccccg
gccctggaaccagaggccacctgggagggggtccgagaaaggttcctcaaagaatctgcg
ttcgaagacgtgactctggagtctgagaggaaaaggatattcaaagacttcatgcatgtc
ttggagcacgagtgccagcatcatcactccaagaccaagaaacattccaagaagtccaag
aagcaccaccggaagcgctcccgctcccggtctcgatcgcgatcgggctcggagtctgat
ggtgaagacgattatcacaacaagaagaagaagcgctcacagtccaagtccccgtccgag
cgttcctccagcggtgaatctgagagaagttataagaagtccaagaagcacaagaagaag
ggaaagaagaggcgtcacaagtcgcagtctcctgaatctgaaggcgaacgaaaagataaa
ggaagagagagggacagcaagcgtgagaaggaccaggagaaggagaaagagagcgacaag
tcccgggggaagagtcgctctgactccaagcagaagtctcctaaaaggaaatctaccaag
gaggagggtggctgggacacatcaggcagcgagctgagtgaaggagagctggagaagagg
aggaggactctactagaacagctggatgctccttaa
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