Oncorhynchus keta (chum salmon): 118386328
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Entry
118386328 CDS
T09424
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118386328 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118386328 (bard1)
04121 Ubiquitin system [BR:
oke04121
]
118386328 (bard1)
03036 Chromosome and associated proteins [BR:
oke03036
]
118386328 (bard1)
03400 DNA repair and recombination proteins [BR:
oke03400
]
118386328 (bard1)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
118386328 (bard1)
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
118386328 (bard1)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
118386328 (bard1)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
118386328 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_UBOX
zf-RING_10
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
118386328
NCBI-ProteinID:
XP_035629892
LinkDB
All DBs
Position
7:complement(34998195..35030928)
Genome browser
AA seq
827 aa
AA seq
DB search
MDPDLCTDEGWTKTKEAVAHFRKLLLCSKCLKLMNEPVCLGVCEHMLCRSCAGPQAGEGC
VVCHSPAWVKDIRINRQLSNITELYGNLDSLLNPTGSDYSDALPITPPAQSDKSVLKHKK
NFKIWFSPRSRKVRCRVEKPAVVPLPEAGSGTVKAAPRHPETLPESKGKDLSVFNFNSSS
QDSGSSSPQRATNYEKKKPTKKTRNGGGVRKPAAGGGQKPTKHEETKQNVKTQRLEAVNQ
QWGFGGAREGDVGEEEEQVTAEGEHRSSKRVSFQSPATLPATAESQTEDLPQGNTIILSP
SRSILKVVQPGENVPLSEDQDGPSPHTTPSQLDKISAKQHSKPDEEMTKKPDLPSPPKRT
PKRFCVEAKNISQCTPKKPKASPGQGRRPAVDRVVLPAMHTSPSPAASPRQGRTSTSTRI
SREGEQQWGSSLCSPAPLGKRSPGRLSQNSPAVVKRNHKGETPLHLAAIKGDVETVKELL
DQGADPNLKDNAGWTPLHEACNLGHLGVVEVLVERGGVLLNTPGYKNDSPLHDAVRNGHT
GIAMLLLQHGASQSVLNMFGLRPVDYAVSPEMQAILLAASEGPHPVNSPLSPSPSLNKAS
EGVRLEEQAVVLGSKLSQSQQTRLAKLGHLLGGKRADAFSCSVTHVVVPDGPMPTTLSTL
LGLLNGCWVLNFSWVEACLQADSWISESDHEAGAGPQRSRINRHSLLPPLLDGCFFYLMG
SFRKPPRDELLQLVREAGGQILTRQPKPDSDVTQTLSAAAYHASLGSDQALCTQYIIYDP
QGSYRPPRVRLGKVWSAPSTWVVNCISAFQLLPVPELESQTHLVCNQ
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatctttgcaccgacgaaggctggacgaaaacgaaggaggctgtcgcgcat
tttcgaaaacttctgctgtgctcaaaatgtttaaaactgatgaacgaacctgtgtgcctc
ggggtttgtgaacatatgctttgcaggtcgtgtgctggtcctcaggctggagagggatgt
gtggtgtgtcacagtcctgcctgggtgaaagacattcggatcaacagacaactcagcaat
atcacagaactctatggcaacctagactcactgctcaatcccactggctccgattactcc
gatgcccttcccattacaccaccagcacagtctgataaatctgtcttaaagcacaagaag
aacttcaagatctggtttagtccccgcagccgcaaggtgcgctgccgggtagagaagcct
gcggttgtgcctctcccggaggctgggagtgggactgtgaaagctgctccaagacatcct
gagacactacctgagtctaaaggcaaagacctgtctgtcttcaacttcaactcctcctcc
caagactctggctcctcctctcctcaaagggcgactaactatgaaaagaagaaaccgact
aagaagacgagaaatggtggtggtgtcaggaagcctgcagctgggggtgggcagaaacca
accaagcatgaagaaaccaagcagaatgtcaagacacagaggctggaggcagtcaaccag
cagtggggctttggcggagcgagagaaggagatgtcggagaggaagaagagcaggtcact
gcagagggagagcacaggtctagtaaaagagtttccttccaaagtccagccaccttgcct
gccactgcggagtctcagacggaggatctccctcaggggaacaccataatcctcagcccc
agcagaagcatcctgaaggtggttcagccaggagagaacgtcccactctctgaggaccag
gacggtccaagcccacacaccaccccttctcagctggataagatatctgcaaagcagcac
tccaaaccagatgaagaaatgactaaaaagcctgacctgccctcccctcctaagcgcact
cccaaaagattctgtgtggaagctaaaaacatctcacagtgtaccccaaagaaacccaag
gcatctcctggccagggtagacgtccggcagtggacagggttgtactcccagccatgcat
acctcgccctcccccgctgccagccccagacagggtcgaacctccaccagcaccaggata
tccagagaaggagagcagcagtggggcagtagtctgtgttcccccgcccccctggggaag
agatccccgggcagactgtcacagaacagcccagcggtagtgaagagaaaccacaagggg
gagacacccctacacctggcagcaataaagggtgatgtggagaccgtgaaggagctccta
gaccaaggggctgaccccaacctgaaagacaatgctggatggacaccgctgcacgaggca
tgtaacctgggccacctgggtgtagtggaggtgttggtggagaggggaggcgtgctgttg
aacacaccaggctacaagaacgattctcctctacacgacgctgtcaggaacggacatact
ggcatcgccatgctactgctgcagcacggggcttcacagagcgtcttgaatatgtttggc
cttcgccctgtggactatgccgtgagcccagagatgcaggcaatccttctggcagcctct
gaaggaccccacccagtcaactcacctctcagtccttcacccagcctcaataaggccagt
gaaggtgtgaggctggaggaacaggcagttgtactgggtagtaaactgtcccagtcccaa
cagacccggctggccaaactgggacatctcctgggaggaaagagggcagacgccttctcc
tgctctgtcactcatgtggtggtaccagacgggccgatgcccaccaccctgtccactctc
cttggcctcctgaacggctgctgggtcctcaactttagctgggtagaggcgtgcctgcag
gcagatagctggatctccgagagtgaccatgaagcaggagcaggaccgcaacgcagccgc
attaacagacacagcctgctgcccccgctgttggacggttgtttcttctacctcatgggc
tccttcaggaagccccccagggacgagctcctccagctggtgagagaggcagggggccag
attcttacccgacagcccaaaccagacagtgatgtgacccagaccctgtctgctgcagcc
taccacgcctctctgggctcagaccaggccctgtgtacccagtacatcatctatgatccc
cagggctcttacaggccacccagggtgaggttaggaaaggtgtggtcagctccatctaca
tgggttgtaaactgtatatcggccttccagctactgccagtgcctgagcttgaatcacag
acacacctggtgtgtaatcagtga
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