Oncorhynchus keta (chum salmon): 118386350
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Entry
118386350 CDS
T09424
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04270
Vascular smooth muscle contraction
oke04625
C-type lectin receptor signaling pathway
oke04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
118386350
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
118386350
09153 Circulatory system
04270 Vascular smooth muscle contraction
118386350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118386350
Membrane trafficking [BR:
oke04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
118386350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
NTS
PH
Motif
Other DBs
NCBI-GeneID:
118386350
NCBI-ProteinID:
XP_035629933
LinkDB
All DBs
Position
1:complement(45797797..45863919)
Genome browser
AA seq
1464 aa
AA seq
DB search
MSDTQSSITDRFPSKANRSSSILSKDHPPDKKPKSDKPSVSASHEFDPTDILVQKSDCVL
AEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLLEGEAKVVFLGAQAGSSSVTSP
NSPGQPMGERPYSPHDRITSPLPIWEENNSVHNQKVHILQKMLSKEQEDLQAMKEEYSRN
PTPKLLKDIQEAKKHIPQLQGQLSKATGGAQDALRLGDGDDGSMVDMDHTPSSSSNELSW
SSSMMSPVLRGFASASPESLCQRDLLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLSPST
VSSPSRFSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQFDPAP
LLCYLYADLCKQTNSKETRRVFMDFHNFFIDRGANLKVAVPESLSSDLDRRRTELIPEEL
NRQYVQMVQDTQLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERERACAE
NIITKIEDVLLTTQSTEEEKCTTMQYVILTYMKHLGVKVKEPRGLESKWVRINFLPKIKK
SIKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSVGKAMDLNKPRPQKQLSQPCLEHLE
AGRLRASQSNEGSELIHSSPTNATSPTNSTTNNNASDGGSRDSEFVGTPNSAFPKLSEGL
GDLDSLEYTPNTHFDYSLSPYSLDQLQEEDRESGILEGTPKAIRRLDGLGSTEVQSEDDQ
GGTDSEHDPLNWQQLVGREVLAGLQPHEIKRQEVINELFYTERAHLRMLKVLDNIFYQKL
TREGILPPADIKNIFTNLEDIVQLHVWISEQMVTIRKRNETSVIDQIGDDLLSWFSRGEE
EKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVEMQRL
TKYPLLLENIAKYTDDTVEKDKVKKAGDCCRKILNHVNQAVKESENKQRLEDYQRRLDLS
SLKQTENPMISELKNLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERL
ILKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTV
SEQRMWQRQITQRADAMKVKPNSVIPLPQTDGERDGVEIITAGIAQLSKDPDHISSGSSQ
SIDKEGCAASGGEMQTSLPDANPFEGLKPEEEPNRDEGLYGDPDLADRLPFRMAVEGLSE
SDSVGFSPSRADDALKTLSALKQVLVTQLMSQEDGEGAGRSSAGGGRLLRTTSLRTPVDS
RARVAVQNGSGRCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESSTDDD
LQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHIRNLQTNLNHLKEVEA
KYHSLLRQRPARSSTDMDDNKDKR
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggtttcccagtaaagcaaacagaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaaaagtgataaaccgtcagtc
tccgcttcacatgagtttgaccctacagacattctggtgcagaagagtgactgtgttcta
gcggagggaaagccagagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaaccctgtgtttgtgcagctcgtcaaa
gaggatggtgctgcagagcgtgcgggtgtacagacaggtgaccggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtaaagctcataaaatcgggctcc
tatgtggccctcacagtgttggggcgaccccccgggttgccccagatcccccttttggag
ggcgaggctaaggtggtgttcctgggggcccaggcggggtcgtcctctgtcacctctcca
aactcccctggacagccaatgggggagcgaccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacaaccaaaaggtgcacattctgcag
aagatgttgtccaaagagcaagaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgcccaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
gggcagcttagtaaggccactgggggagcacaggatgccctgcgattgggtgatggagat
gatggaagcatggtagacatggaccacacaccttcctccagtagcaatgaactctcatgg
agcagcagtatgatgtcccctgttctccgtggttttgcatctgcctccccggagagcctg
tgccaaagagacttgttgtcctaccacagcccaaagagcacaccccgagacagcttcaac
tcctgccactcccccgacccagaagacactccagacctggactccctgtccccctccact
gttagcagcccctcacgcttctcccagatcatcggagctgaggacgactactttgactct
gatcaggaacaggtcaatggccagtgcagctgtttccagagcatggagctgctcaagtcc
agacctgcccacctggcagcgttcctgcatcacgtcgtctcccagtttgaccctgcaccg
ctgctctgctacctctacgctgacctgtgcaagcagaccaactccaaagaaaccagacgg
gtgttcatggacttccacaacttcttcatcgaccggggagctaatttaaaagtagctgtt
cccgagtccctatcctctgaccttgaccggaggaggacggagctgatccctgaggagctg
aacagacagtacgtccagatggtgcaggacacccagctccctgacatccagaggaacctg
gaggactttaggcagaagcgcagtatgggcctaaccctggcggagggggagctggcccgg
ctggacacggagcgcgtcagagaccgggtagcactggagagagaacgtgcttgtgctgaa
aacatcatcaccaagatagaggatgttctgttgacaactcaatccacagaggaggagaaa
tgcactactatgcagtatgtcatcctcacgtacatgaagcaccttggcgtgaaagtcaaa
gagccacgcggcctagagtccaaatgggtccgcatcaacttcctccccaagatcaagaag
agcatcaagaccgagaaggagggaggggaggagaaggtgaaacgcaccaggtttcccagc
atcctcgggcctcctcgccggcccagccgagtcgaccccacgtccgttggcaaggccatg
gacctcaacaagccacggccccagaagcagctgtcccagccctgcctggagcacctggag
gcgggtcgcttgagggccagtcagtccaatgagggctcagagctcatacattcctccccg
accaacgccacctcgccaaccaacagcaccaccaacaacaacgcctctgacggaggcagc
agagactctgagtttgttgggacccctaactctgccttccccaaactgagtgagggtctt
ggagacctggacagtctagagtacactccaaacacacattttgactacagcctgagcccc
tatagcctggaccaactacaggaggaggacagggagagtggaattcttgaaggaacaccc
aaggctatcagaaggttggatggccttggttctacagaggtgcagagtgaagacgaccaa
ggaggcactgactccgagcatgaccccctcaactggcagcagctggtgggacgagaggtc
ctggccggactccagccccacgagatcaaaagacaggaagtcattaacgagctgttctac
actgagagggcccacctgcggatgctcaaagtgctggacaacatcttctaccagaagctc
accagagagggcatactgcctcctgccgacatcaagaacatcttcaccaacctggaggac
attgttcaactgcatgtttggatatctgagcaaatggtaacaattcggaaaaggaatgag
acgtccgtaatcgaccaaataggagacgacttgttgtcctggttcagcaggggcgaggag
gagaagatcaagcaggcggtgggcacattctgcagcaaccagcccttcgctctggagctc
atcaagagcaggcagaagaaggactcgcgcttcacctccttcatgcaggaggctgagagt
aaccgactgtgtcgaagactccaactgaaggacatcattcccgtggagatgcagaggctc
accaagtaccctcttctactggagaacatcgccaagtacacagatgacaccgtggagaaa
gataaggtaaagaaggcgggcgactgctgcaggaagatcctcaatcatgtcaaccaagcg
gtgaaggagtctgaaaacaagcagaggctggaggactaccagaggcggttagacctctcg
tctctgaagcagacagagaaccccatgatttcagagctcaagaacctggacctgaccaag
aagaagatggtccatgagggaccactgtcatggaaggtcaacaaggacaagactattgag
ctgtacaccctgctcctggaggacatcctggtgctgctgcagaagcaggacgagcggctc
atcctcaagtgccatagcaaaaacctgtctggcaccgccgacaccaagcacatcttcagc
cccatcatcaagctcaatgcggtgctggtgcgctctgtggccacagacaacaagtcgttc
tttgttctctcaatgtcggacaacggggcccaaatctacgagctgatggcccagaccgta
tcagagcagagaatgtggcagcggcagatcacccagagagcggacgccatgaaagtgaag
ccgaacagcgtcatccccttacctcaaacggatggagagagagacggtgtggagatcatc
actgcaggcatagcccaactcagtaaggacccggaccacatctcctctggaagcagccag
tctatagataaagagggctgcgctgcctctggaggcgagatgcagacctctctcccagat
gccaacccatttgaaggactcaagccggaagaggagcccaaccgggatgaggggctttac
ggggacccggaccttgcagataggctgcccttccgcatggccgtagaagggctcagcgaa
tcggacagtgtgggcttcagtccttcgagagctgacgatgccttaaagacattgtcagcg
ctgaagcaagtccttgtgacccagctcatgtcacaggaggacggcgaaggcgccgggcgc
tcctccgcagggggcgggcgtcttctcaggaccacgtccctgaggacccccgtggacagc
cgggcccgggtggcggttcagaacggctcagggaggtgcacccaggcaagccaccctgag
gacccggctcaggacctggtgtctggggacacgggcttctttgagtcccccgaggattat
gcagggtacttagtcttggagggctacgggggctcgggcgagagcagcacggacgacgac
ctccaggccacggggaagcagctgagcgcctcgcggggctgcggggcaggagactctggg
atcagcctaagattctcctctgcctcacaggcaggcagcatctccagcttcagccgacag
gtcctgtcccacatccgcaacctgcagaccaacctcaaccacctcaaggaggtagaggcc
aagtatcacagtctactacgccaaaggccggccaggtcatcaacagacatggatgataac
aaagataagagatag
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