KEGG   Oncorhynchus keta (chum salmon): 118386359
Entry
118386359         CDS       T09424                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118386359
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oke03041]
    118386359
   03036 Chromosome and associated proteins [BR:oke03036]
    118386359
Spliceosome [BR:oke03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    118386359
 Complex B
    118386359
 Complex C
   U2 SnRNP specific factors
    118386359
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    118386359
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 118386359
NCBI-ProteinID: XP_035629946
LinkDB
Position
7:complement(38888318..38914271)
AA seq 1327 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAEQ
TPGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGHT
TPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSR
WDETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERNR
PLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQIN
DQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALR
QITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVV
IEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVAS
ALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDE
QQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLM
DAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKH
FWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMG
NLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVL
WRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGAL
KAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMR
ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIA
IVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL
MDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGL
RVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYLR
YELEYFL
NT seq 3984 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacatcgaggcccagatcctggagatccagggc
atgaaagctgccctggtggaggagggaggagatcagggtgtgggcctggactctactgga
tactacgaccaggagatctacggtggcagcgatagccgcttcgctggatatgtcacctcc
atcgcggccaatgaacaggaggatgatgatgaggaggactcgtcaacgagtctacttgga
cagaagaaaccgggatatcacgctccggtggctatactcaatgcaataccacagtcagat
gaacagtacgacccgttcgccgaacaccggcccgctaagattgcagagcgtgaagacgaa
tacaaggccagacgtcgacagatgatcatctctccggagcgtcttgacccctttgcagat
gggggcaaaacgccggaccctaagctgcagtccagatcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagagaaggccaaaaca
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgctgctgctgccgccgca
aagcgtaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaacccccagc
aacgccggcacaccgaagaagatgtccagctgggaccaggctgaccaggctgctgagcag
accccaggacacacccctggtcacaccccctccaacagccgctgggacgagacccccgga
aggaacaagggcagtgagaccccaggggccacccccagctcccgaatgtgggaccccacc
cctagccacaccccggctggagcagccacgccaggcagaggggacacaccgggacacacc
acccctggacacgggggagccacaggcagcgtgcgcaaaaaccgatgggacgaaaccccc
aagacggagagggagacccctggtcatggaagtggttgggccgagaccccccgtacagac
agaggagatgagtcagtgggagagacccccacccccggggccagtaaaaggaaatcccgt
tgggacgagacccccgccagccagatgggctcttccaccccactgatgacccctgggaaa
actcctatcggaacccctgccatgaatatggccactccttctccaggtcacctgatgagc
atgaccccagagcagctgcaggcctggcgttgggagagggagatagacgagaggaaccga
cctctcacagacgatgagctggatgccatgttcccagaaggatacaaggtccttccccca
ccagcaggctatgtgcccatccgtaccccggcccggaagctgtctgccacccccaccccc
atggggggcatgacgggcttccatatgcagcaggaggaccgctccatgaagcagatcaac
gaccagcccagtgggaacctgcccttccttaaaccagatgacattcagtactttgacaaa
ctgcttgttgaggtggatgagtccactctgagcccagaggaacagaaggaacgtaagatc
atgaaactactgctgaagatcaagaacggaacaccccccatgagaaaggctgccctgcgt
cagatcacagacaaggcaagggagtttggagcagggcccctgttcaaccagatcctgccc
ctgctcatgtctcctactctggaggaccaggagcgccacctgctggtcaaggtcatagac
cgcatcctctacaagctggatgacctggtccgcccatatgtacacaagatcctggtggtg
attgagcccctgctgattgatgaagattactatgccagagtggagggcagagagatcatc
tctaatttggccaaggctgccggcctggccactatgatctccactatgagacctgatatt
gacaacatggatgaatacgtcagaaatacaacagcaagagcttttgctgtcgtagcgtcc
gctctgggtatcccctccctcttgcccttcctcaaagctgtgtgtaagagcaagaagtct
tggcaggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatgggctgt
gccatcctgccccatctgaggagtctggtggagatcatcgagcatggtctggtggatgag
cagcagaaggtgcggaccatcagtgccctggccatcgccgccctggcggaggctgccacg
ccctacggtatcgagtcctttgactccgtactcaaacccctgtggaagggtatccgacag
cacagaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctctaatg
gatgctgagtacgctaactactacaccagagaggtcatgctgatcctcatcagagagttc
cagtcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgttgtggt
actgacggtgtggaggccaactacatcaagacagagatcctgcctcccttcttcaagcac
ttctggcagcacaggatggccctggacagacgcaactacagacagctggtggacaccaca
gtggagctggccaataaggtgggagcagcagagatcatctctcgtatagtagatgacctg
aaggacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatgggg
aacctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcatcctg
tatgccttccaggaacagaccactgaggactctgtgatgctgaacgggtttggcacggtg
gtgaacgccctggggaagagggtgaagccctacctgcctcagatctgtggtacagtgctg
tggcgtctcaacaacaagtctgccaaggtccgccagcaggctgctgatctcatctcccgc
accgccgtggtcatgaagacctgccaggaggagaagctgatgggtcacctgggagtggtg
ttatatgagtatctaggagaagagtatcctgaagtactgggaagtatccttggtgctctc
aaggccatcgtcaatgtcatcggtatgcacaagatgactccaccaatcaaagacctgcta
ccgcggctgacgccaatcctgaagaacagacatgagaaggtgcaggagaactgtattgac
ctggtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggagtggatgcgc
atctgctttgagctgctggagctcctcaaggcccacaagaaggccatccgcagagccacc
gtcaacaccttcggatacatcgccaaggctatcggaccccatgatgtgctggccacacta
ctcaacaacctgaaggttcaggagcgtcagaaccgagtgtgtaccaccgtagccatcgcc
atcgtggctgagacctgttctcctttcaccgtgctccccgccctcatgaacgagtaccgt
gtgcctgagctcaacgtgcagaacggcgtgctcaagtccctgtccttcctgtttgagtac
atcggggagatgggcaaggactacatctatgctgtcacgcccctgctggaggacgcactg
atggacagagacctggtccacagacagactgccagtgccgtggtgcagcacatgtccctg
ggcgtctacggcttcggctgtgaggactcccttaaccacttgttgaactacgtgtggccc
aacgtgtttgagacgtcgccccatgtaatccaggctgtcatgggggccctggagggcctc
agggtggctatcggcccctgccgcatgctgcagtattgcctgcagggtctcttccaccca
gccaggaaggtccgagacgtctactggaagatctataactcgatctacatcggttcccag
gatgctctgatcgctcactacccccacgtctacaacgatgagaagaacccttacctccgc
tatgagctggagtacttcctgtga

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