Oncorhynchus keta (chum salmon): 118386605
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Entry
118386605 CDS
T09424
Name
(RefSeq) afadin-like isoform X1
KO
K05702
afadin
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04517
IgSF CAM signaling
oke04520
Adherens junction
oke04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
118386605
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
118386605
04530 Tight junction
118386605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RA_3
Yop-YscD_cpl
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
118386605
NCBI-ProteinID:
XP_052379501
LinkDB
All DBs
Position
8:complement(16601825..16731662)
Genome browser
AA seq
1936 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERKLDLDEKPLVVQLNWNKD
DREGRFVLKNENDIIPKKMQSNGPEREKEGVIQNFKRTLSKKEKKKEKKREKEAHIPDGD
EQALNREDGENSRLAAEVYKDMPENSFTRTISNPEVVMKRRRQQKLEKRMQEFRSSDGRP
DSGGTLRIYADSLKPNIPYKTILLSTTDMADFAVVEALEKYGLEKENPREYCIARHTDDK
SGKEIVLDDMECPLQIFRDWPNDRGALVFQLKKRPPDYVPKKGRKPEDKGLRGKGMDGPL
YGSLPPEKLPYLVELSPGRGNHYGYYTYQHLEDGSDSRDKPKLYRLQHSVTEVGSDTTDD
GAIQLFGPGILPHHCKLMHTEGLVTVTPHSLEAETYVDGQRVTETTVLRSGATLQFGASH
VFKFVDPSYDHSMGKGGPGPMMRGRHKSGSVSETTFDLQGDIHSGTALPASKSSGKLDME
RSANGSERGMVKPMIRGEQQDGRSQDILSPELTLPASIEFRDNSEDAFLSAIINYTNSST
VHFKLSPTYVLYMTCRYVMSSHYRPDVSPSERTHKVIAIVNKMVSMMEGVIQEIPEGAQK
QKNIAGALAFWMANASELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVQCLQSDLNN
YMPAFLDDPEEQNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFN
KLAMEADSGLCSHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSM
QDVQNIHNTCFKLNSLQLNALMTNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGRE
VQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLDPLCQRGFCRLTPHPRSPGTWTIH
FEGADCDSHFFADNSDLQMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQDKLGIYIKSVVK
GGAAEVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATL
LNQPSPMMPRALQGGRDKNGKLRPKSEGFELYNNSVQNGSPESPQGDWQAYPEPKKLSGE
ERLLKNRADHRSSPNVANQSQSPGGNTVYPGGPGTKITSVSTGNLCADDETSPPRPEAYP
IPTQTYPREYFTIPASKSTDRMGPAAGQLYTDDRGPPGSMEDHHNSSIAIQQMGHSQEEL
CDLPGGYPPAPLRPEDLVHLQQQQREADYQRASGEHWVNHHQVSSSVESSTSSQEHLNYS
SNKTQSNHKSGPGRWKTPGPIAPHPGPVAQATRTDLPPPPPPPVHYQDFDSQLDLPLPPP
PSASQQQAAAADRKKREEQQRWYEKEKARLEEERERKRREQERKLGQVRNPSMPVAHNNN
QHGGTLPPPTQHYQMPPPQSPMPMQQVPLPYFPPQGQQQAQQQQQPPRPEKLSTLPRATT
LPPQGNPMDTVIRELLPQQQPRTIERRDLQYITISKAALSSSDSLSPDPWKRDAREKLEK
QQQLHIVDLLDREIQDLQAKPERTAEESDRLRKLMLEWQFQKRLQESKQSDEEDEEDDDE
DVDSMMIMQRLEAEKRARLQDEERRRKQQLEEIRKREAEDRAKQEEERHWREEERARREV
DEKRRQEEEYYTRLEEGRRRQHEEAERKLLTPDEPGLYRPPLPRDYQPQPPPPTASHATT
ATNAPPPPPQRNTSYLKTQVVSPDALYTAKFVSYNDEEEEDAAGQVKLSATRKSYGDLPP
AHKPQLPARKPRPLSDGIFLSSSFQPPAVNANSTAGQPPPPPIKPSLSFIPTGNSKGFNS
YTGNTTGVVGSEDGYKDLREKWTKGGQEQENTLTGEAPESMTFKERQRLFSQGKEVSNKV
KASRKLMELENELNTK
NT seq
5811 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagcagggaggaggagcggcggaaactagctgacatcattaaccactggaac
gccaaccggctcgacctgttcgagatcagccaacccaccgaggacttggagttccacggc
gtgatgcgtttctacttccaggaccgcgtggcggggaactttgccaccaagtgcatccgc
gtgtcctccacggccaccactcaggacgtcatcgagacgctggccgagaagttccggccc
gacatgagaatgctctcctcgccaaaatactccctctacgaggtccacgtcagcggggaa
gaacggaagctggacctggatgagaagccactggtggtgcagctcaactggaacaaagac
gaccgcgagggacgcttcgtcctcaagaacgagaacgacatcatccccaagaagatgcag
agcaatgggccggagagggagaaggagggagtaatccagaacttcaagcggacactgtcc
aaaaaagagaagaagaaggagaagaagagagagaaggaggctcacattccggacggagat
gagcaagcactgaacagagaagatggagagaactccagactggcggcggaggtgtacaag
gacatgccggagaacagcttcaccaggaccatctctaaccctgaggtggtgatgaagagg
aggcggcagcagaaactggagaagaggatgcaggagttccgcagcagcgacggcaggccc
gactcgggggggacgttgaggatctatgcagacagtctgaagcccaacattccttataag
accatcctgctgtccacgacagacatggcagactttgctgtggtggaggccctggagaag
tacggcctggagaaggagaacccccgggagtactgcatcgccaggcacacagatgacaag
tctgggaaggagatcgtcctggacgatatggagtgtcctcttcagatcttcagagactgg
cccaacgaccgaggagccctcgtgttccagctgaagaagagacctccagactacgtgcct
aagaagggccggaaaccagaggacaagggcctcagagggaagggcatggacgggcccctg
tacggctctctacccccagagaaactgccgtacctggtggagctcagcccagggagggga
aatcactatggctactacacgtatcagcacctggaagacggctccgactccagggacaaa
ccgaagctctaccgtctgcagcacagtgtcactgaggtgggctcagacacgacagacgac
ggcgccatccagctgtttggtccaggtatcctgccccaccactgcaaactgatgcacaca
gagggtctggtgacagtgacgccacacagtctggaggctgagacctacgtggacggccag
cgtgtcaccgagaccaccgtgctgcgaagcggagccacacttcagttcggcgcctcccac
gtcttcaagtttgtggaccccagctacgaccacagcatgggcaagggaggtcccggaccg
atgatgagaggaaggcacaagtcagggagtgtttctgagacgacctttgacctgcaaggg
gacattcacagtgggacggccctccccgccagcaagagctcagggaagctggatatggag
cgttcagccaacggcagcgagagaggcatggtcaaacccatgatccgcggggagcagcag
gacggcaggtcccaggacatcctgagcccagaactgacgctgccggccagcatcgagttc
agggacaactccgaagatgcctttctgtcggctatcatcaactacaccaacagctccacg
gtgcacttcaagctgtcccctacctacgtactgtatatgacctgtcgctacgtcatgtcc
agccactaccggcccgacgtcagtccctcggaacgcactcacaaggtcatagccatcgtt
aacaagatggtgagcatgatggaaggagtcatccaggagattcctgaaggggcccagaag
cagaagaacatcgcgggggccctggccttctggatggccaatgcctcagagctactcaac
ttcatcaaacaggacaaggacctgtcgcgcatcacactggacgcccaggacgtgctggca
cacctcgtccagatggccttcaagtacctggtccagtgtctgcagtctgacctgaataat
tacatgcctgcgtttttggatgacccagaggaacagaaccctcagaggcccaaaatagag
gacgttctgcacaccctgacgggcgccatgtcgctgctgcgccgttgccgtgtcaacgcg
gcgctgaccattcagctgttctcgcagctcttccacttcatcaacatgtggctgttcaac
aagctggcgatggaggccgactctggactgtgttcacactactggggcgccatcctccgc
cagcagctcagccacatcgaggcctgggcagagaaacagggcctggagctggccgccgac
tgccacctcagtcgcatcgtacaggctacgactctcctcaccatggacaagtactccatg
caggacgtgcagaacatccacaacacctgcttcaagctgaactccctgcagctcaacgcc
ctcatgaccaactaccactgtgctcccgacgagccttacatcccccccgagctgatagac
cacgtggttgccgtggcggagaacacggcagatgagctggcccgtagcgacggccgagag
gtccagctggaggaggaccccgacctgcaactgcccttcctactgcccgaggacggctac
tcctgcgacgtcgtgcgcaacattcccaacggattccaggagttcctggaccccctttgt
cagagaggattctgtcggctaacccctcacccccgctcccctgggacctggaccatccac
tttgaaggagccgactgcgacagccacttttttgcagacaactccgacctgcaaatgcgg
aaggaaccggaagttgtgacggtcaccctgaagaagcacaatggcatgggcctcagcatt
gtggctgccaagggtgctggacaggacaagctcgggatctacatcaagtctgttgtgaag
ggaggtgcggctgaagtggacggtcgtctggctgcaggggaccagctgctgagtgtggac
ggccgcagcctggtgggcctctcccaggagagggctgcagagttgatgacgaggacaggc
tctgtggtgacactggaagtggccaaacagggtgctatttaccacggcctggccacactc
ctcaaccagccttctcctatgatgcccagagcgttacaaggagggcgtgataagaacggt
aaactgagaccaaagagtgaaggctttgaactgtacaacaactcagtccagaacggctct
ccagagagcccccagggtgactggcaggcctacccagaaccaaagaagttgagcggggag
gagagactactgaagaaccgggccgaccaccgctccagccccaacgtggccaaccagagt
cagagtccaggaggaaataccgtctacccaggaggacctgggacaaagatcacctctgtc
tccacgggcaacctgtgtgctgatgacgagacctctccacctcgtcccgaggcctaccca
atccctactcagacctaccccagggaatacttcaccatcccagcctccaagtctacagac
cggatgggcccggccgcggggcagttatacactgacgacaggggccctcctggctccatg
gaagaccaccacaacagcagcatcgccatacagcagatgggccactctcaggaggagctg
tgtgacctcccagggggctaccccccagcccccctgcgccctgaggacctggtccacctg
cagcagcagcagagagaggctgactaccagcgggccagtggggaacactgggtcaaccac
caccaggtctcctcctccgtggagtcctccacctccagccaggagcacctcaactactcc
tccaacaagacccagagcaaccacaagagtggcccaggacgctggaagacccctggcccc
atcgccccgcacccaggccccgtggctcaggccacacgcacagacctcccaccccctcca
ccgccccctgtacactaccaggactttgattcccagctcgacctgcccctacccccccct
ccctctgcctcccagcagcaggcagcagccgccgaccgcaagaagcgcgaggagcagcag
cgctggtatgagaaggagaaggcccggttagaggaggagagggagaggaaaaggagggaa
caggagaggaagctgggacaggtccgtaacccatccatgcctgtagcccacaacaacaac
caacatgggggcacactcccccctcccacacagcactatcagatgccccctccccagtcc
cccatgccaatgcagcaggtgcccttgccctacttccccccccagggccaacagcaggcc
cagcagcagcagcagccccccaggcctgagaaactgtccactctgcccagagcaacaacc
ctgccccctcagggtaacccaatggacacagtgatcagagagctgctcccccagcagcag
ccccgcaccatcgagcgccgggatctgcagtatatcaccatcagcaaggcggcgctgtcc
tccagcgacagcctgtccccagacccctggaagagagacgcccgggagaagctggagaag
cagcagcagctgcacatcgtagacctgctggacagggagatccaggacctgcaggccaag
ccggagcgtacggccgaggagagcgaccggctcaggaagttgatgctggagtggcagttc
cagaagagactgcaggagtccaagcagagtgatgaggaagatgaggaggatgacgacgag
gacgtggactccatgatgatcatgcagcggctggaggcggagaagagagcaaggttgcag
gatgaggagcggcggcggaagcagcagctggaggagatccgtaagcgcgaggcggaggac
cgggccaagcaggaggaggagagacactggagagaggaggagagggccagacgagaggtc
gatgagaagaggaggcaggaggaggagtactacacacgtctggaggaagggcggcgccgg
cagcacgaggaggccgagcgcaagctgctgacccctgacgagcctggtctgtacagacct
cccctccccagggactaccagcctcagcccccccctcccactgcatcccacgcaaccact
gccactaacgctccaccacccccacctcagagaaacacttcctacctcaaaacccaggtc
gtctcccctgacgccttgtacactgccaagtttgtctcgtacaatgacgaggaggaggag
gacgctgcaggtcaggttaagctctccgccaccagaaagtcctatggtgacctcccgccc
gcgcacaagccgcagctgcctgcgcgcaagccccgccctctgtctgatgggatctttctg
tccagctcattccagccgccggctgtcaatgccaacagtactgcagggcagccccctccc
cctcccatcaaacccagcctcagcttcatcccgacaggcaactctaaaggatttaattca
tacactggaaacacaaccggggttgtaggatcagaagatggttacaaggacctgcgagag
aaatggacaaaaggtggtcaagaacaggaaaacactttaactggagaagcgccagagagt
atgaccttcaaggagcgccagcggctcttttcccaagggaaggaggtgtctaacaaagtc
aaggcctcacggaaactcatggagctggaaaatgaactcaatacaaagtag
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integrated database retrieval system