Oncorhynchus keta (chum salmon): 118387121
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Entry
118387121 CDS
T09424
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X3
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118387121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118387121
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118387121
U7-dependent histone pre-mRNA processing factors
118387121
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
118387121
NCBI-ProteinID:
XP_035631181
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Position
8:35915735..35928614
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AA seq
796 aa
AA seq
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MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKERMKKEATKKLEQEKEVDVDSS
DESDMEDDLELPAVVKTKHHDLMMKGDGVRKGSFFKQAKKSYPMFPTHEERVKWDEYGEI
IRPEDFLVPELQATEEEKNKLESGMANGDEPMDQDSSSKVPTKCTSTTENLEIKARVTYI
DYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFTKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGVLPEEGMVKGEKGT
GEEVVEDSELAMDVTPADDATTDHSVVAEQRAMKTLFGEDVRELSEESDVIPTLEPLPAH
EIPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCD
DYYKIRELLYQQYAVV
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctattatcaaactgactgctgtgtcaggggtgcaggaggagtctgccctctgc
tacctgctgcaggtggatgagttccgcttcctcctggactgtggctgggatgagagcttc
tccatggacatcattgattccatgaaaaggtatgtccaccaggttgatgcggtgctcctc
tcccatcctgaccccctgcacctgggggccctgccctatgctgtgggcaagctgggccta
aactgccccatatatgccaccatccccgtctacaagatgggtcagatgttcatgtatgac
ctgtatcagtcgcgcaacaacactgaggacttcaacctgttcaccctggatgatgtggac
tgcgctttcgacaaaatccagcagctgaagtactcccagattgtcaatctgaaagggaaa
ggacatggtctgtccatcactccacttcctgctggtcacatgatcggagggaccatctgg
aagattgtgaaggatggggaagaggagattgtttacgcggtggacttcaaccacaaaaga
gagatccacctgaatgggtgtacgttggagtcggtgagtcgtccctctcttctcatcaca
gactcgttcaacgctacatatgtgcagccgcgtcgcaagcaaagggacgagcagctcctt
accaatgtaatggagaccctacgcggagacggcaacgtgctgatcgcggtggatacggca
ggccgtgtactggagctggctcagctgctggaccagatctggaggacaaaggacgccggg
ctgggggtctactctctggccctgctcaacaacgtcagctacaacgtggtggagttctcc
aagtctcaggttgagtggatgagtgacaagctgatgcgctgcttcgaagacaagcgcaac
aaccccttccagttccgtcacctgtccctgtgccacagcctggccgacctggcccgcgtg
cccagccccaaggtggtgctctgcagtcagcccgacctggagtctggcttctcccgtgag
ctcttcatccaatggtgtcaggacgccaagaactctgtgatccttacctaccgtaccacg
cccggcaccctgggccgctacctcatcgacaaccccggggagaagatgctggacctggag
attaggaaacgggtgaagctggaaggcagagagctggaagaatacctagagaaagagaga
atgaagaaggaagctaccaaaaaacttgaacaagaaaaagaggtggacgtggactcgagt
gatgagagcgacatggaggatgacctggagctgccggcggtggtgaaaaccaaacaccac
gatctcatgatgaagggagacggcgtccgcaagggcagcttcttcaaacaggccaagaag
tcttaccccatgttccccacccacgaggagagggtcaaatgggatgagtacggagagatc
atcagaccggaggacttcctggtaccagagctccaggccactgaggaggagaagaacaag
ctggagtcgggcatggccaacggggacgaacccatggaccaggactcctcatccaaagta
cccaccaagtgtacctccactacggagaacctagagatcaaagccagggtgacttacatc
gactacgagggccgctcggacggcgactccatcaagaagatcattaaccaaatgaaaccg
cggcagctggtgatcgtgcacggcccccccgaggccagcctggacctggccgagtcctgc
aaggccttcaccaaggacatcaaggtctacacgcccaagctgcaggagactgtggacgcc
accagtgagacacacatttaccaggtgcggttgaaagactcactggtgagctcgctgcag
ttctgccgcgccaaggacacagagctggcgtggatcgatggcgtactggacatgcgcgtg
gtcaaggtggacacaggcgtgctgcctgaggagggcatggtgaaaggcgagaagggaact
ggcgaggaggttgtggaagacagtgagctggccatggacgtgacccctgctgacgatgcc
accacagaccatagcgtggtggcggagcagcgcgccatgaagacgttgtttggcgaggat
gtgcgcgagctgtcggaggagagtgatgtcatccctaccctggagcctctgcctgcccac
gagatcccaggccaccagtcagtgtttatcaacgagccgcgcctgtccgacttcaagcag
gtgctgctgagggaaggcatccaggctgagtttgtgggaggagtgctggtgtgcaacaac
atggtggccgtccgcaggacggaggcagggcgcatcggcctggaaggatgcctgtgtgat
gactattataagatccgtgagctgctgtatcagcagtatgctgtggtgtag
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