Oncorhynchus keta (chum salmon): 118387330
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Entry
118387330 CDS
T09424
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03082
ATP-dependent chromatin remodeling
oke03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118387330 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118387330 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oke01009
]
118387330 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118387330 (smarcb1b)
03036 Chromosome and associated proteins [BR:
oke03036
]
118387330 (smarcb1b)
Protein phosphatases and associated proteins [BR:
oke01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118387330 (smarcb1b)
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118387330 (smarcb1b)
SWI/SNF complex
118387330 (smarcb1b)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118387330 (smarcb1b)
PBAF complex
118387330 (smarcb1b)
SWI/SNF complex
118387330 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
118387330
NCBI-ProteinID:
XP_035631455
LinkDB
All DBs
Position
9:complement(15748484..15766759)
Genome browser
AA seq
366 aa
AA seq
DB search
MALSKTFGQKPIKFQLEQDGDFYMVGSEVGNYLRMFRGSLYKRYPSLSRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKGKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSERENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFSENPLPTVEIAIRNTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRMRRLA
NTAPAW
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaagcaaaacctttgggcagaaaccgattaaatttcagttagagcaagatgga
gacttttacatggttggatcagaggttggaaactacctgcgtatgttcaggggctccctg
tataaaaggtacccatcactctcgaggaggttagcctcagtagaggagaggaagaaaatt
gtagcatcatcgcacgccacaagtgtgactctgctgaaggcctccgaatgtgaagagatt
ttcgaggggaacgatgagaagtacaaagctgtttccatcagcacagaaccaccggcctac
ctcagggagcagaaggggaagaggaacagccagtgggtccccacactgcccaacagctcc
caccacctggacgctgttccttgctccaccaccatcaaccgcaaccgcatgggccgcgac
aagaagaggaccttccccctgtgctttgacgaccacgacccggcggtgatccatgagaat
gcgtctcaggccgaggtgctggttcccatccgtctggacatggagattgatgggcagaag
ctcagagatgcgttcacctggaacatgaacgagaagctgatgaccccggagatgtttgca
gagatcctgtgtgacgacctggacctgaacccactggccttcgtcccggccattgcctca
gccatccgccagcagatagagtcctaccccacagacagcatcctggacgagcagaccgac
cagagggtcatcatcaagctgaatatccacgttgggaacatctccttggtggaccagttt
gagtgggacatgtcggagagggagaactctccggagacgtttgccctcaagctgtgctcc
gagctgggcctgggaggagagtttgtcaccaccatcgcctacagcatccgtggccagctc
agctggcaccagaggacgtacgccttcagtgagaatcccttgcctacggtggaaatcgcc
atccgcaacacaggcgacgctgacacatggtgccccctgctggagaccctgacagacgca
gagatggagaagaagatcagggaccaggacaggaacactagacgaatgagacgacttgcc
aacactgcccctgcctggtag
DBGET
integrated database retrieval system
