Oncorhynchus keta (chum salmon): 118387424
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Entry
118387424 CDS
T09424
Symbol
tia1
Name
(RefSeq) nucleolysin TIA-1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118387424 (tia1)
03041 Spliceosome [BR:
oke03041
]
118387424 (tia1)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
118387424 (tia1)
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
118387424 (tia1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
Calcipressin
Motif
Other DBs
NCBI-GeneID:
118387424
NCBI-ProteinID:
XP_035631649
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Position
9:complement(25326449..25337003)
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AA seq
390 aa
AA seq
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MMDDETPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFYEHRHA
ASSLAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIKAAFAPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
ATYETNTKHLSFEEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFTPFGQIMEIRVFPDKG
YSFVRFNSHEGAAHAIVSVNGTSIDGHVVKCYWGKETTDMVSPMQQVQMPQVRPQQNKIG
FAAQPYGQYAQWYGNAQQIGQYVPNGWQVPTYGVYGQAWNQQGFNHLQAGAGWTGVGAVS
NGGVVEPGQGVNGTVLANQSGMGTAGYHTH
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgacgaaacacccaagaccctgtatgttgggaacctgtcccgggatgtgact
gaagccctcatcatgcagctgtttggacagatcggcccctgcaagagctgtaaaatgata
gtagacacggcaggtaatgacccatactgctttgtggagttctacgaacacaggcacgct
gcctcgtcactcgcagccatgaatggtcgtaaaataatgggtaaggaggtcaaggtgaac
tgggccacaacccctagcagccagaagaaagacacaagcaatcacttccatgttttcgtt
ggagacctcagtcctgaaatcaccacggatgacatcaaggctgctttcgccccctttggg
aggatatctgatgctcgagtggtgaaagacatggctactggcaaatctaaaggctatggc
tttgtgtccttcttcaacaaatgggatgcagagaatgccatccaacagatgggaggtcag
tggttgggaggacggcagatcaggactaactgggccaccaggaagccccctgcgcccaaa
gccacctacgagacaaacaccaaacacctgtcgtttgaagaggttgtgaaccagtccagt
cccagcaactgtaccgtctactgtggaggtgtcacaacaggcctcacagagcaactgatg
aggcagaccttcacccccttcggtcagatcatggagatcagagttttcccagacaaaggc
tactcatttgtgaggttcaactcccacgagggagcggcccacgccatagtgtcagtgaac
gggacgtccatagatggtcatgtggtgaagtgttactgggggaaagaaaccacagacatg
gtcagccccatgcagcaggtacagatgcctcaggtaagaccacagcagaacaaaataggt
tttgcagcgcagccctacggccagtatgcccagtggtacggtaacgcccagcagattggc
caatacgtcccaaacgggtggcaggtgcccacctacggagtctatggacaggcctggaac
cagcagggattcaaccatttacaggcgggtgccgggtggacgggtgtgggagccgtcagt
aatggtggtgtggtggagcctggacagggagtcaatgggactgtgctggccaaccagtcc
ggcatgggcaccgctggctaccacacccactga
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