KEGG   Oncorhynchus keta (chum salmon): 118387424
Entry
118387424         CDS       T09424                                 
Symbol
tia1
Name
(RefSeq) nucleolysin TIA-1 isoform X1
  KO
K13201  nucleolysin TIA-1/TIAR
Organism
oke  Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:oke00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oke03019]
    118387424 (tia1)
   03041 Spliceosome [BR:oke03041]
    118387424 (tia1)
Messenger RNA biogenesis [BR:oke03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     118387424 (tia1)
Spliceosome [BR:oke03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    118387424 (tia1)
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_7 RRM_Nup35 Calcipressin
Other DBs
NCBI-GeneID: 118387424
NCBI-ProteinID: XP_035631649
LinkDB
Position
9:complement(25326449..25337003)
AA seq 390 aa
MMDDETPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFYEHRHA
ASSLAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIKAAFAPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
ATYETNTKHLSFEEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFTPFGQIMEIRVFPDKG
YSFVRFNSHEGAAHAIVSVNGTSIDGHVVKCYWGKETTDMVSPMQQVQMPQVRPQQNKIG
FAAQPYGQYAQWYGNAQQIGQYVPNGWQVPTYGVYGQAWNQQGFNHLQAGAGWTGVGAVS
NGGVVEPGQGVNGTVLANQSGMGTAGYHTH
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgatggacgacgaaacacccaagaccctgtatgttgggaacctgtcccgggatgtgact
gaagccctcatcatgcagctgtttggacagatcggcccctgcaagagctgtaaaatgata
gtagacacggcaggtaatgacccatactgctttgtggagttctacgaacacaggcacgct
gcctcgtcactcgcagccatgaatggtcgtaaaataatgggtaaggaggtcaaggtgaac
tgggccacaacccctagcagccagaagaaagacacaagcaatcacttccatgttttcgtt
ggagacctcagtcctgaaatcaccacggatgacatcaaggctgctttcgccccctttggg
aggatatctgatgctcgagtggtgaaagacatggctactggcaaatctaaaggctatggc
tttgtgtccttcttcaacaaatgggatgcagagaatgccatccaacagatgggaggtcag
tggttgggaggacggcagatcaggactaactgggccaccaggaagccccctgcgcccaaa
gccacctacgagacaaacaccaaacacctgtcgtttgaagaggttgtgaaccagtccagt
cccagcaactgtaccgtctactgtggaggtgtcacaacaggcctcacagagcaactgatg
aggcagaccttcacccccttcggtcagatcatggagatcagagttttcccagacaaaggc
tactcatttgtgaggttcaactcccacgagggagcggcccacgccatagtgtcagtgaac
gggacgtccatagatggtcatgtggtgaagtgttactgggggaaagaaaccacagacatg
gtcagccccatgcagcaggtacagatgcctcaggtaagaccacagcagaacaaaataggt
tttgcagcgcagccctacggccagtatgcccagtggtacggtaacgcccagcagattggc
caatacgtcccaaacgggtggcaggtgcccacctacggagtctatggacaggcctggaac
cagcagggattcaaccatttacaggcgggtgccgggtggacgggtgtgggagccgtcagt
aatggtggtgtggtggagcctggacagggagtcaatgggactgtgctggccaaccagtcc
ggcatgggcaccgctggctaccacacccactga

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