Oncorhynchus keta (chum salmon): 118387474
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Entry
118387474 CDS
T09424
Name
(RefSeq) pseudouridylate synthase 1 homolog
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oke03016
]
118387474
Enzymes [BR:
oke01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
118387474
Transfer RNA biogenesis [BR:
oke03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
118387474
Prokaryotic type
118387474
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
HSF_DNA-bind
Motif
Other DBs
NCBI-GeneID:
118387474
NCBI-ProteinID:
XP_035631762
LinkDB
All DBs
Position
9:29929775..29933473
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AA seq
392 aa
AA seq
DB search
MMSEEGSGNMLIKPLKRVEEENGESGENGHIRKKLKSVEPTGNERKHPKRKVVLLLAYSG
KGYYGMQRNAGSSQFKTIEDELVTALIKSGCIPDNHGDDMKKMSFQRCARTDKGVSAAGQ
VVSLKLWMIEDVMEKINSNLPPQIRVLGLKRVTGGFNSKNSCDARTYSYMLPTVAFSPKD
YYTNNSAAFRLEPETLQRVNQLFGSYKGTHNFHNFTSQKAARDPSARRYITEMSCGEPFV
RGGAEFAEITVRGQSFMMHQIRKMIGLVIAVVKGYSGDEVLKRSWGEEKVDVPKAPGLGL
VLEKVHFDRYNKRFGGDGLHECLEWTEEEQAILAFKEEHIYPSIVETECKEGSMASWMAT
LPIHDFEATATGAQDKDREQDDEEGNRSDSAL
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgaagaagggtcaggaaatatgctgatcaagccactgaaacgagtggaggaa
gaaaatggagagtcgggtgagaatggacacatcagaaagaagctgaagtctgtagaacca
actggcaatgagaggaaacaccccaaaagaaaagtggtcctgcttttggcatattcaggc
aaaggttactacggtatgcagagaaatgctggatcctcccagttcaaaaccattgaggat
gagctggtcacagcactgattaagtctgggtgcatcccagacaaccatggagatgacatg
aaaaaaatgtcgttccaaagatgtgcgagaacagacaagggtgtttctgcagcaggtcaa
gtggtctctctaaaactgtggatgattgaagacgtaatggaaaagatcaactccaatctt
ccaccacagatcagagtgctgggtctgaaacgagtgactgggggcttcaattctaaaaac
agctgtgatgcccgcacatactcctatatgctccccactgtggccttctccccaaaggac
tattacaccaacaattctgctgcattccgccttgagccagagacactgcagagagtaaac
cagctgtttggcagctacaagggcacccataactttcacaacttcacctcccagaaggcc
gcgcgggaccccagcgcccgccgctacatcacagagatgtcctgtggtgagccctttgtg
cgtggcggcgccgagttcgcagagattactgtgcgtggccagagcttcatgatgcatcag
atccggaagatgatcggcctggtgatagctgtggtgaagggctattcgggggacgaagtg
ttaaagcgaagctggggtgaggagaaagtggacgtgcccaaagcccctgggctgggcctg
gttctggagaaggtgcactttgacaggtacaacaagcggtttggtggggacggcctccat
gagtgcctggagtggactgaagaggagcaggccatcttggctttcaaggaggagcacatc
taccccagcattgtggagacagagtgcaaggaagggtccatggctagctggatggccaca
ctgcccatacatgactttgaggcaactgcaacaggagcgcaggataaggatagggagcag
gatgatgaggagggcaatagatcagattctgcactttga
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