Oncorhynchus keta (chum salmon): 118387952
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Entry
118387952 CDS
T09424
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118387952 (rc3h2)
04121 Ubiquitin system [BR:
oke04121
]
118387952 (rc3h2)
Transcription factors [BR:
oke03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118387952 (rc3h2)
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118387952 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
zf-C3HC4
zf-RING_10
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
118387952
NCBI-ProteinID:
XP_052381913
LinkDB
All DBs
Position
9:43966866..44011986
Genome browser
AA seq
1099 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSNGHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDLLPVNCALLQLVGAQVLESQPVTLSSAVELEHYEVCRVCVEELALYLKPISGGKGVVT
LSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSVG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANI
DHNPDAASPSWDELEGVVLAVKVMVDGLVEFTQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGSNCTFAHTQDELEKYRMRNKKISGVGRPFPLAQGSMGSEGGDSGEEACAGGL
KGSDKVGSGSLIEGSTHPHLIPRGGNMMEEMKRERSVVNGSNGLTGSSRSSSGSLEQKTV
SPPKTPVNHSSAPSPHGPGSRVECGSGHPKQGHFLMRGPPHQPPPHQPQSSELYYQDPRP
PYDTQPYQPASNYYTSTMHHHKPCMARFLRSSHVLESSLPPSMAPPYSEQHPSFPPPRER
AGPSPYGPPPAPQYGPLAPAHGGYAPLYDSRRMWRPQLYHREDARSNSLPPEVLHSSVYQ
PPLRERYASLDSPYCSAGEHRAALHRDSYGHVPLGYEDLFKRKQEQWTHHHHGNMNRPSP
SSPVFTVDFGAEHDSGGDQCMNCKYRGEERLAHYSPWSCGTISTCISPFEPEHHNASAHS
CSEHSEVENGERKRWLHTFEPYRRLKDEDPIIPFGEGPIISKWGAISRASRTGYHTTDPV
QATACQGSNSTTPVNFRDYGPHIGHGDYRWSSCGSDSSSHSSFLESDQLGVCELSARDRS
FGSGEKAGAGGLLQTDYCKDMTESEPDRDIELELSVLDMEDIDLQDNSQQSEESLELRDP
HLLTPPSSEPQRSQTDKLSADKMEAHLMKKMAFRKSLSPGGLGSGGLSVGKLMMRTGPPR
LGDMGPRPNTGPEMLLNGS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcagcccaatggacagagttcctctcctgccccatctgctacaatgag
tttgacagcaatggccacaagcccatcagtctgggctgctcgcacaccgtgtgtaagacc
tgtctgcacaagctgcaccgcaaggcctgccccttcgaccagacagccatcagcactgac
atcgacctcctgcctgtcaactgtgccctgctacagctggtgggagctcaggtcctggag
tcccagcctgtgactctgagcagtgctgtggagttagagcactatgaggtgtgccgggtg
tgtgtggaggagctggctctctatctcaaacccatcagtggaggaaaaggtgtggtgaca
ctcagtccgagcgcgctcagtcgacccatgcagaggaagctggtgacactggtcaactgc
cagctggtggaagaggaggggcgggtacgtgcggtgcgggcgggccggtcgctaggggaa
cgtaccgtcacagagctcatcctgcagcaccagaacccacagcagctctctgccaatctg
tgggccgccgtcagggcacggggatgccagttcctggggcctgcgatgcaggaggacgct
ctaaagctggtgttgctggccctagaggacggctcagctttgtccaggaaggtactggtg
ctgtttgtggtccagaaactggaggctaggttccctcaggcctccaagacctccgtcgga
catgtggtccagctgctctacagagcctcctgctttaaggtgaccaagcgtgacgaggac
tcgtcgctgatgcagctaaaggaggagttccgtacctacgaggccctgcgccgcgagcac
gacgcccagatcgtccacatcgccatggaggcggggctccgtatctcacctgagcagtgg
tcttccctgctctacggagacctcatccacaagtcacacatgcagtctatcattgacaag
ctccagtccccagagtcctttgcaaagagtgtccaggagctgacgatagttctacagaga
acaggagaccctgccaacctgaacagcctcagaccacacctggaactactggccaacatc
gaccacaacccagacgcggcgtctccgtcgtgggacgagctggagggcgtggtgctggcg
gtgaaggtgatggtcgacggcctggtggagttcacacagaacttcagtaagaagagccac
gagacaccacagccgcagcccaacagcaagtacaagaccagtatgtgtcgagacctccgg
cagcagggtggctgtccccgaggatccaactgcaccttcgcacacacacaggacgagcta
gagaaatacagaatgagaaacaagaagatcagtggcgtgggccggcccttccccctagcc
caggggagtatgggtagtgaggggggcgactcaggagaggaggcctgcgctgggggactg
aagggctcagacaaggtgggatcggggtccttaatagaggggtccacacacccccatctc
atccccaggggaggcaacatgatggaggagatgaagagggagaggtctgttgttaacgga
tccaacggactcacaggctccagccgctcctcatctggctccttggaacaaaagactgtt
tctcctccaaagacgcctgtcaaccactcctcagctccttctccccatggtccggggtct
agggtagagtgtggctctggtcatcccaaacaagggcacttcctaatgagaggaccccct
caccagcctcctccccaccagcctcagtcctctgaactgtactaccaggacccccgacct
ccctacgacacacaaccctaccagccagccagtaactactacacctctacaatgcaccac
cacaaaccctgcatggcccgcttcctgcgttccagccacgtcctcgagtcctctctgccg
ccttccatggcccctccgtactccgagcagcacccctcctttcccccaccacgggagcgc
gcgggtccttctccctacggccccccgccggccccccagtacgggcccctggccccggcc
catggtggctacgctcccctgtatgacagtcggcgtatgtggagaccccagctgtaccac
cgcgaggacgccaggagtaactccctgcctccagaggtgctgcactcctctgtgtaccag
ccccccctccgagagagatacgcctccctggacagtccctactgctcggcgggggagcac
agagcagcgctgcacagggactcttatgggcatgttcctcttggatacgaggatctgttc
aagcggaaacaggagcaatggacacaccatcaccacggcaacatgaacaggccctccccg
tcctcccccgtcttcaccgtagactttggtgcagagcatgacagtggaggtgatcagtgt
atgaactgtaagtaccgtggtgaggagcgtctggcccactactctccctggtcctgtgga
accatcagtacctgcatcagcccctttgaaccagagcatcacaacgcctcagctcactcc
tgctccgaacactcagaagtagagaatggtgaaaggaaacggtggctccacacatttgag
ccgtaccgtcgtctgaaagacgaggatcccatcatcccatttggagagggacccatcatc
tcgaaatggggggctatctcccgcgcctcccgtacagggtaccacaccactgaccccgtc
caggccacagcctgccagggaagcaacagcaccacccccgtcaacttcagagattatggc
ccacacatcggtcacggggactacaggtggagctcctgtgggtctgactcgtccagccac
tcgagtttcctagagagtgaccagctgggagtgtgtgagctttctgcccgtgaccggtcc
ttcggcagtggagagaaggctggtgcaggaggcctgctgcagactgactactgtaaggac
atgacagagagcgaaccggacagagacattgagctggagctgtctgtactagacatggag
gacattgacctgcaggacaacagtcaacaatcggaggagtcccttgagctaagggacccc
cacctcctcacccctcccagcagtgaaccccagaggagccagacagacaagctgtccgct
gacaagatggaggctcacctgatgaagaagatggccttcaggaagtctctctcccctgga
ggactgggctcgggaggcctcagtgtggggaagctgatgatgagaaccggccctccaagg
cttggggacatgggccctcgccccaacacaggccccgagatgctgctcaacggcagttga
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integrated database retrieval system
