Oncorhynchus keta (chum salmon): 118388160
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Entry
118388160 CDS
T09424
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118388160
03015 mRNA surveillance pathway
118388160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118388160
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118388160
5.6.2.5 RNA 5'-3' helicase
118388160
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118388160
mRNA cycle factors
Common to processing body (P body) and stress granule
118388160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
NPHP3_N
Helicase_RecD
DEAD
AAA_16
AAA_22
UvrD_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
118388160
NCBI-ProteinID:
XP_035632879
LinkDB
All DBs
Position
1:complement(55068259..55092256)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVNG
PNEGLHNGGVDDVAKASQILSELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVETTHDYQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYQLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLTNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSSFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
RPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGTGPA
HMAAMNMPIPFNLVVPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRTRGMGNHGSSG
QANGHNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtacgggccgagttctcaaacgctcaccttcctggacactgaagaa
gcggagctacttggagcagatacccagggctcggagtacgagtttaccgattttacccta
cctagccagacacaaactcaaggccacacccagagtcagctggacaatcaggtgaatggt
cctaatgaagggcttcacaatggaggggttgatgatgttgccaaggcgagccaaattctc
tctgagttgaactttgaggaggatgaagaggacacctattacactaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcgtgtgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatcgtaaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagacgggccgttgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatacccgccaag
gccgactctgtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacataaactgggacagttcccagtggcagccgctgatccaggaccgctgcttcctgtcc
tggctggtaaagatcccctcggagcaggagcagctccgggcccgacagattaccgcccaa
cagatcaacaagctagaggagctctggaaggacaatccaacagccactctggaggatctg
gagaagcccggtgtagacgaggagcctcaacatgtgctgctgcgctacgaggatgcctac
cagtaccagaacatcttcggcccccttgtcaaactggaggccgactacgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaggga
gatgagatttgtctgcgctacaaaggagacctggctccactttggaaaggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagcacctgtggaaacaacccacgactaccaggtggatttcgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acgtccgtgtcaggctacatctaccacaaactgctgggccacgaggtggaggatgtcatc
atcaagtgtcagctgcccaaacgcttcactgcccagggcctgcccgatctcaaccactct
caggtgtatgctgtgaagactgtgctgcaaagacccctcagtcttatccaaggccccccc
ggcactgggaaaactgtcacctctgccaccatagtgtaccagctcgccaggcagggcaac
ggacccgtgctggtgtgtgctcccagtaacatcgcggtggaccagctgactgagaagatc
cacatgtcaggtctgaaggtggtccggctgtgtgctaagagcagagaggccatcgactcc
cccgtctcattcctggcgctgcacaaccagatccgcaacatggacagtatgccagagctg
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtctgctgacgagaagcgt
taccgggccctgaagcgcaccgctgagcgagagctgctcacgaatgcggatgtgatctgc
tgtacctgtgtgggggcaggagatccacgcctggccaagatgcagttccgctccatcttg
attgatgagagcacccaggccaccgagccagagtgcatggtgcctgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtctctgtttgagcgtctggtggtgctgggcatcagg
cccattcgtctgcaggtgcagtaccgtatgcacccggccctcagctctttcccctccaac
atcttctacgagggctccctgcagaacggagtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccgcagccagacaagcccatgttcttctatgtaactcaaggccag
gaggaaatagccagctctggaacgtcttacctgaacagaactgaggcggccaacgtggag
aagatcacaaccaggctgctgaaggctggggccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagttcagtggttccctccat
acaaaactctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaag
gactttatcatcctgtcgtgcgtacgagccaacgagcaccagggcatcggcttcctcaat
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aacccaaaggccctgtccaagcagcctctgtggaaccaccttctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgagagagagcctgatgcagttcagc
aggccccgcaagctggtcaatgccatcaaccctggagcccggttcatgagcactgccatg
tatgatgcccgtgaggccctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtatttccaaacccacgatcagatcggcatgattgggactgggccagcc
cacatggcggccatgaacatgcctattcccttcaacttggtggtgccccccatgcctccg
ccaggctacctggcccaggccaacggccctgctgcaggtcgtggtggggtgctgaagggc
aaagcggggcgtggcgggcgccagaggacccgcggcatggggaaccacggtagcagcggg
caggccaacgggcacaacagccaggctagccaggacgtatcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagtcagccctcccagatgagccagcctggc
ctctcccagcctgaactttcccaggacagttatttaggtgacgagttcaagtcccagatc
gacgtggctctgtcgcaggattcgacttaccagggtgaacgtgcataccaacatggtgga
gtgactggactgtcacagtactag
DBGET
integrated database retrieval system
